miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8570 5' -42.1 NC_002169.1 + 9601 0.7 0.999973
Target:  5'- aCGAUGggGGUAAuGAaaaauucaaagUCGUGUGUc- -3'
miRNA:   3'- aGCUACuuUCGUUuCU-----------AGCACAUAau -5'
8570 5' -42.1 NC_002169.1 + 10551 0.75 0.995698
Target:  5'- -aGAUGAAAGCAAAcAUUGUGUAc-- -3'
miRNA:   3'- agCUACUUUCGUUUcUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 10679 0.93 0.396359
Target:  5'- gUCGAUGAAAGCAAAGAUCGuUGUGg-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGC-ACAUaau -5'
8570 5' -42.1 NC_002169.1 + 10741 0.78 0.970261
Target:  5'- uUCGAcGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 10849 0.89 0.599462
Target:  5'- gUCGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 10880 0.67 1
Target:  5'- gUCGAaGAucuuggacgAAGCAAAGAUCGaguacuagaguuuUGUAUUGc -3'
miRNA:   3'- -AGCUaCU---------UUCGUUUCUAGC-------------ACAUAAU- -5'
8570 5' -42.1 NC_002169.1 + 10969 0.69 0.99999
Target:  5'- uUCGAcGAAA-CAAAGAUCaUGUAUUAa -3'
miRNA:   3'- -AGCUaCUUUcGUUUCUAGcACAUAAU- -5'
8570 5' -42.1 NC_002169.1 + 10978 0.77 0.985615
Target:  5'- cUCGAcGAAAGCAAAcAUCGUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUcUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 11068 0.78 0.970261
Target:  5'- uUCGAcGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 11096 0.84 0.809558
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 11196 0.72 0.999721
Target:  5'- -gGAcGAAAGCAAAGAUCGaGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCaCAUaau -5'
8570 5' -42.1 NC_002169.1 + 11204 0.78 0.970261
Target:  5'- -gGAcGAAAGCAAAGAUCaUGUAUUAa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcACAUAAU- -5'
8570 5' -42.1 NC_002169.1 + 11315 0.92 0.445838
Target:  5'- uUCGAcGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 11332 0.85 0.789394
Target:  5'- gUCGAcGAAAGCAAAGAUCGUGcAUUu -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCACaUAAu -5'
8570 5' -42.1 NC_002169.1 + 11445 1.05 0.100152
Target:  5'- gUCGAUGAAAGCAAAGAUUGUGUAUUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCACAUAAU- -5'
8570 5' -42.1 NC_002169.1 + 11474 0.74 0.998291
Target:  5'- gUCGAUGAAAGCAAAcAUCaUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUcUAGcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 11602 0.84 0.809558
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 11604 0.91 0.466574
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUAUUAu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUAAU- -5'
8570 5' -42.1 NC_002169.1 + 11732 0.91 0.486726
Target:  5'- gUCGAUGAAAGCAAAGAUCGaguacuagaguuuUGUAUUGc -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGC-------------ACAUAAU- -5'
8570 5' -42.1 NC_002169.1 + 41928 0.75 0.995698
Target:  5'- -gGAcGAAAGCAAAGAUCGaGUAUg- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCaCAUAau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.