miRNA display CGI


Results 1 - 20 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8570 5' -42.1 NC_002169.1 + 129825 0.66 1
Target:  5'- uUCGAcUGAAcgaacGCGacGAGAUCGUGUGc-- -3'
miRNA:   3'- -AGCU-ACUUu----CGU--UUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 129761 0.67 1
Target:  5'- gUUGGUGAcGAGCGGAuggacgcGAUUGUGUAUg- -3'
miRNA:   3'- -AGCUACU-UUCGUUU-------CUAGCACAUAau -5'
8570 5' -42.1 NC_002169.1 + 120199 0.84 0.809558
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 120071 0.99 0.206101
Target:  5'- uUCGAcGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCACAUAAU- -5'
8570 5' -42.1 NC_002169.1 + 119762 0.92 0.445838
Target:  5'- uUCGAcGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 119635 0.84 0.809558
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 119580 0.84 0.809558
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 119482 0.73 0.999269
Target:  5'- -gGAcGAAAGCAAAGAUCGUcUAUg- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCAcAUAau -5'
8570 5' -42.1 NC_002169.1 + 119452 0.89 0.599462
Target:  5'- uUCGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 119354 0.87 0.656978
Target:  5'- uUCGAUaAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -AGCUAcUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 118888 0.74 0.99792
Target:  5'- aUCGAUGAGAGCcuguAGAUCGgccGUGa-- -3'
miRNA:   3'- -AGCUACUUUCGuu--UCUAGCa--CAUaau -5'
8570 5' -42.1 NC_002169.1 + 105660 0.84 0.809558
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 105569 1.02 0.14242
Target:  5'- -gGAUGAAAGCAAAGAUCGUGUAUUAa -3'
miRNA:   3'- agCUACUUUCGUUUCUAGCACAUAAU- -5'
8570 5' -42.1 NC_002169.1 + 105532 1.09 0.058303
Target:  5'- uUCGAUGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCACAUAAU- -5'
8570 5' -42.1 NC_002169.1 + 105441 0.9 0.531527
Target:  5'- uUCGAcGAAAGCAAAGAUUGUGUAUg- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCACAUAau -5'
8570 5' -42.1 NC_002169.1 + 105376 0.86 0.725012
Target:  5'- gUCGAcGAucuuggacaaAAGCAAAGAUCGUGUAUUAa -3'
miRNA:   3'- -AGCUaCU----------UUCGUUUCUAGCACAUAAU- -5'
8570 5' -42.1 NC_002169.1 + 105255 1.02 0.14242
Target:  5'- uUCGAUGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 105236 0.92 0.445838
Target:  5'- gUCGAcGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 105130 0.68 0.999999
Target:  5'- ----cGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- agcuaCUUUCGUUUCUAGcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 105115 0.71 0.999949
Target:  5'- -gGAcGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcACAUaau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.