miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8570 5' -42.1 NC_002169.1 + 83426 0.66 1
Target:  5'- aUCGAUGAAAG---GGAU-GUGUAUUu -3'
miRNA:   3'- -AGCUACUUUCguuUCUAgCACAUAAu -5'
8570 5' -42.1 NC_002169.1 + 11332 0.85 0.789394
Target:  5'- gUCGAcGAAAGCAAAGAUCGUGcAUUu -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCACaUAAu -5'
8570 5' -42.1 NC_002169.1 + 105376 0.86 0.725012
Target:  5'- gUCGAcGAucuuggacaaAAGCAAAGAUCGUGUAUUAa -3'
miRNA:   3'- -AGCUaCU----------UUCGUUUCUAGCACAUAAU- -5'
8570 5' -42.1 NC_002169.1 + 42031 1.05 0.100152
Target:  5'- cUCGAUGAAAGCAAAGAUCGUGUAUg- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCACAUAau -5'
8570 5' -42.1 NC_002169.1 + 11196 0.72 0.999721
Target:  5'- -gGAcGAAAGCAAAGAUCGaGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCaCAUaau -5'
8570 5' -42.1 NC_002169.1 + 119482 0.73 0.999269
Target:  5'- -gGAcGAAAGCAAAGAUCGUcUAUg- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCAcAUAau -5'
8570 5' -42.1 NC_002169.1 + 118888 0.74 0.99792
Target:  5'- aUCGAUGAGAGCcuguAGAUCGgccGUGa-- -3'
miRNA:   3'- -AGCUACUUUCGuu--UCUAGCa--CAUaau -5'
8570 5' -42.1 NC_002169.1 + 41928 0.75 0.995698
Target:  5'- -gGAcGAAAGCAAAGAUCGaGUAUg- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCaCAUAau -5'
8570 5' -42.1 NC_002169.1 + 11096 0.84 0.809558
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 120199 0.84 0.809558
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 52942 0.84 0.809558
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 53284 0.78 0.970261
Target:  5'- gUCGAcGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 129825 0.66 1
Target:  5'- uUCGAcUGAAcgaacGCGacGAGAUCGUGUGc-- -3'
miRNA:   3'- -AGCU-ACUUu----CGU--UUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 105660 0.84 0.809558
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 10880 0.67 1
Target:  5'- gUCGAaGAucuuggacgAAGCAAAGAUCGaguacuagaguuuUGUAUUGc -3'
miRNA:   3'- -AGCUaCU---------UUCGUUUCUAGC-------------ACAUAAU- -5'
8570 5' -42.1 NC_002169.1 + 10978 0.77 0.985615
Target:  5'- cUCGAcGAAAGCAAAcAUCGUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUcUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 119580 0.84 0.809558
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 104927 0.85 0.747018
Target:  5'- gUCGAcGAAAGCAAAGAUCaUGUAUUGa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGcACAUAAU- -5'
8570 5' -42.1 NC_002169.1 + 105115 0.71 0.999949
Target:  5'- -gGAcGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 53060 0.73 0.999269
Target:  5'- -gGAUGAAAGCAAAGAUgaUGUAc-- -3'
miRNA:   3'- agCUACUUUCGUUUCUAgcACAUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.