miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8572 3' -43.5 NC_002169.1 + 129655 0.66 0.999999
Target:  5'- -aUGGUgcACACGAUCUcgucGCgUUCGUUc -3'
miRNA:   3'- aaAUCA--UGUGCUAGAaa--CGaAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 120230 0.94 0.25182
Target:  5'- ----aUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaucAUGUGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 120037 1.08 0.045112
Target:  5'- uUUUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 119796 1.07 0.050944
Target:  5'- cUUUGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 119616 0.93 0.302888
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUCAUGUGCUAGAAACGAAAGcAG- -5'
8572 3' -43.5 NC_002169.1 + 119602 1.05 0.068911
Target:  5'- --cAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaUCAUGUGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 119518 0.93 0.29513
Target:  5'- uUUUAGUACACGAUCUUUGCUUUUaUCg -3'
miRNA:   3'- -AAAUCAUGUGCUAGAAACGAAAGcAG- -5'
8572 3' -43.5 NC_002169.1 + 119418 1.08 0.045112
Target:  5'- uUUUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 119325 0.83 0.725897
Target:  5'- ----aUAgACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaucAUgUGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 108374 0.66 0.999999
Target:  5'- ---uGUGC-CGAUU--UGUUUUCGUCg -3'
miRNA:   3'- aaauCAUGuGCUAGaaACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 105690 0.8 0.873213
Target:  5'- ----aUACACGAUCUUUGCUUUC-UCg -3'
miRNA:   3'- aaaucAUGUGCUAGAAACGAAAGcAG- -5'
8572 3' -43.5 NC_002169.1 + 105600 0.81 0.838504
Target:  5'- ----aUACACaAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaucAUGUGcUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 105501 1.03 0.090181
Target:  5'- --cAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 105407 0.81 0.838504
Target:  5'- cUUUAaUACACGAUCUUUGCUUUCaUCc -3'
miRNA:   3'- -AAAUcAUGUGCUAGAAACGAAAGcAG- -5'
8572 3' -43.5 NC_002169.1 + 105400 1.1 0.035339
Target:  5'- cUUUAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAUCAUGUGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 105322 0.8 0.881235
Target:  5'- --aAGUACACaAUgUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUGcUAgAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 105287 0.97 0.19682
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUa -3'
miRNA:   3'- aaAUCAUGUGCUAGAAACGAAAGCAg -5'
8572 3' -43.5 NC_002169.1 + 105202 0.89 0.437715
Target:  5'- uUUUAaUACACGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- -AAAUcAUGUGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 105145 0.75 0.985423
Target:  5'- -----cACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaaucaUGUGCUAGAAACGAAAGcAG- -5'
8572 3' -43.5 NC_002169.1 + 105091 0.97 0.186115
Target:  5'- uUUUAGUACACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUCAUGUGCUAGAAACGAAAGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.