miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8572 5' -43.5 NC_002169.1 + 10551 0.72 0.99881
Target:  5'- -aGAUGAAAGCAAAcAUUGUGUAc-- -3'
miRNA:   3'- agCUGCUUUCGUUUcUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 99937 0.72 0.99881
Target:  5'- aUUGACGcGAGGCGGcgcAGGUCGUGgUAUUGa -3'
miRNA:   3'- -AGCUGC-UUUCGUU---UCUAGCAC-AUAAU- -5'
8572 5' -43.5 NC_002169.1 + 10868 0.73 0.996831
Target:  5'- -gGACG-AAGCAAAGAUCGaguacuagaguuuUGUAUUGc -3'
miRNA:   3'- agCUGCuUUCGUUUCUAGC-------------ACAUAAU- -5'
8572 5' -43.5 NC_002169.1 + 104799 0.74 0.994817
Target:  5'- -gGACGAAAGCAAAGAUUGacUAUg- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCacAUAau -5'
8572 5' -43.5 NC_002169.1 + 37283 0.74 0.99392
Target:  5'- aUCGACG-GAGCAGGGAUCGaUGa---- -3'
miRNA:   3'- -AGCUGCuUUCGUUUCUAGC-ACauaau -5'
8572 5' -43.5 NC_002169.1 + 53494 0.74 0.992902
Target:  5'- aUCGACGggGGUguGGAGAUCGUa----- -3'
miRNA:   3'- -AGCUGCuuUCG--UUUCUAGCAcauaau -5'
8572 5' -43.5 NC_002169.1 + 105125 0.75 0.985612
Target:  5'- cUCuACGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -AGcUGCUUUCGUUUCUAGcACAUaau -5'
8572 5' -43.5 NC_002169.1 + 105481 0.75 0.983636
Target:  5'- -gGACGAAAGCAAAcAUUGUGUAc-- -3'
miRNA:   3'- agCUGCUUUCGUUUcUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 10969 0.8 0.883891
Target:  5'- uUCGACGAAA-CAAAGAUCaUGUAUUAa -3'
miRNA:   3'- -AGCUGCUUUcGUUUCUAGcACAUAAU- -5'
8572 5' -43.5 NC_002169.1 + 105115 0.81 0.842096
Target:  5'- -gGACGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGcACAUaau -5'
8572 5' -43.5 NC_002169.1 + 53156 0.81 0.842096
Target:  5'- -gGACGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGcACAUaau -5'
8572 5' -43.5 NC_002169.1 + 52698 0.81 0.842096
Target:  5'- -gGACGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGcACAUaau -5'
8572 5' -43.5 NC_002169.1 + 71670 0.81 0.842096
Target:  5'- -gGACGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGcACAUaau -5'
8572 5' -43.5 NC_002169.1 + 11196 0.83 0.784372
Target:  5'- -gGACGAAAGCAAAGAUCGaGUAc-- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCaCAUaau -5'
8572 5' -43.5 NC_002169.1 + 104869 0.83 0.753089
Target:  5'- -gGACGAAAGCAAAGAUCGaGUAg-- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCaCAUaau -5'
8572 5' -43.5 NC_002169.1 + 52825 0.84 0.742384
Target:  5'- uUCGAUGAAAGCAAAcAUCGUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUcUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 119482 0.84 0.742384
Target:  5'- -gGACGAAAGCAAAGAUCGUcUAUg- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCAcAUAau -5'
8572 5' -43.5 NC_002169.1 + 104987 0.84 0.720631
Target:  5'- uUCGAUGAAAGCAAAGAUCaUGUGc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUaau -5'
8572 5' -43.5 NC_002169.1 + 52932 0.84 0.720631
Target:  5'- cUCGAUGAAAGCAAAGAUUGaGUAUg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCaCAUAau -5'
8572 5' -43.5 NC_002169.1 + 42350 0.85 0.698505
Target:  5'- cUCGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.