Results 21 - 40 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8572 | 5' | -43.5 | NC_002169.1 | + | 11096 | 0.94 | 0.272899 |
Target: 5'- -gGACGAAAGCAAAGAUCGUGUAc-- -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCACAUaau -5' |
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8572 | 5' | -43.5 | NC_002169.1 | + | 42032 | 0.94 | 0.272899 |
Target: 5'- -gGACGAAAGCAAAGAUCGUGUAc-- -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCACAUaau -5' |
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8572 | 5' | -43.5 | NC_002169.1 | + | 119635 | 0.94 | 0.272899 |
Target: 5'- -gGACGAAAGCAAAGAUCGUGUAc-- -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCACAUaau -5' |
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8572 | 5' | -43.5 | NC_002169.1 | + | 42158 | 0.91 | 0.406538 |
Target: 5'- -aGAUGAAAGCAAAGAUCGUGUAc-- -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCACAUaau -5' |
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8572 | 5' | -43.5 | NC_002169.1 | + | 10679 | 0.89 | 0.476592 |
Target: 5'- gUCGAUGAAAGCAAAGAUCGuUGUGg-- -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGC-ACAUaau -5' |
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8572 | 5' | -43.5 | NC_002169.1 | + | 11068 | 0.89 | 0.487089 |
Target: 5'- uUCGACGAAAGCAAAGAUCaUGUAc-- -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGcACAUaau -5' |
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8572 | 5' | -43.5 | NC_002169.1 | + | 52815 | 0.89 | 0.487089 |
Target: 5'- cUCGAUGAAAGCAAAGAUgGUGUAc-- -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAgCACAUaau -5' |
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8572 | 5' | -43.5 | NC_002169.1 | + | 11204 | 0.89 | 0.487089 |
Target: 5'- -gGACGAAAGCAAAGAUCaUGUAUUAa -3' miRNA: 3'- agCUGCUUUCGUUUCUAGcACAUAAU- -5' |
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8572 | 5' | -43.5 | NC_002169.1 | + | 53284 | 0.89 | 0.487089 |
Target: 5'- gUCGACGAAAGCAAAGAUCaUGUAc-- -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGcACAUaau -5' |
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8572 | 5' | -43.5 | NC_002169.1 | + | 10741 | 0.89 | 0.487089 |
Target: 5'- uUCGACGAAAGCAAAGAUCaUGUAc-- -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGcACAUaau -5' |
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8572 | 5' | -43.5 | NC_002169.1 | + | 53076 | 0.88 | 0.519206 |
Target: 5'- -gGACGAAAGCAAAGAUCaUGUAUUGa -3' miRNA: 3'- agCUGCUUUCGUUUCUAGcACAUAAU- -5' |
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8572 | 5' | -43.5 | NC_002169.1 | + | 10978 | 0.88 | 0.552125 |
Target: 5'- cUCGACGAAAGCAAAcAUCGUGUAc-- -3' miRNA: 3'- -AGCUGCUUUCGUUUcUAGCACAUaau -5' |
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8572 | 5' | -43.5 | NC_002169.1 | + | 11732 | 0.87 | 0.5733 |
Target: 5'- gUCGAUGAAAGCAAAGAUCGaguacuagaguuuUGUAUUGc -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGC-------------ACAUAAU- -5' |
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8572 | 5' | -43.5 | NC_002169.1 | + | 41928 | 0.86 | 0.642206 |
Target: 5'- -gGACGAAAGCAAAGAUCGaGUAUg- -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCaCAUAau -5' |
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8572 | 5' | -43.5 | NC_002169.1 | + | 42222 | 0.85 | 0.653531 |
Target: 5'- -gGACGAAAGCAAAGAUUGUGUu--- -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCACAuaau -5' |
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8572 | 5' | -43.5 | NC_002169.1 | + | 42291 | 0.85 | 0.653531 |
Target: 5'- -gGACGAAAGCAAAGAUUGUGUu--- -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCACAuaau -5' |
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8572 | 5' | -43.5 | NC_002169.1 | + | 119354 | 0.85 | 0.664835 |
Target: 5'- uUCGAUaAAAGCAAAGAUCGUGUAc-- -3' miRNA: 3'- -AGCUGcUUUCGUUUCUAGCACAUaau -5' |
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8572 | 5' | -43.5 | NC_002169.1 | + | 42419 | 0.85 | 0.687334 |
Target: 5'- gUCGAUGAAAGCAAAGAUCaUGUAc-- -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGcACAUaau -5' |
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8572 | 5' | -43.5 | NC_002169.1 | + | 10849 | 0.85 | 0.687334 |
Target: 5'- gUCGAUGAAAGCAAAGAUCaUGUAc-- -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGcACAUaau -5' |
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8572 | 5' | -43.5 | NC_002169.1 | + | 104997 | 0.85 | 0.687334 |
Target: 5'- uUCGAUGAAAGCAAAGAUCaUGUAc-- -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGcACAUaau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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