miRNA display CGI


Results 1 - 20 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8572 5' -43.5 NC_002169.1 + 120071 1.09 0.044706
Target:  5'- uUCGACGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUAAU- -5'
8572 5' -43.5 NC_002169.1 + 105532 1.05 0.076554
Target:  5'- uUCGAUGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUAAU- -5'
8572 5' -43.5 NC_002169.1 + 11315 1.02 0.10888
Target:  5'- uUCGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 105236 1.02 0.10888
Target:  5'- gUCGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 119762 1.02 0.10888
Target:  5'- uUCGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 11604 1.02 0.115387
Target:  5'- -gGACGAAAGCAAAGAUCGUGUAUUAu -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUAAU- -5'
8572 5' -43.5 NC_002169.1 + 11445 1.01 0.1295
Target:  5'- gUCGAUGAAAGCAAAGAUUGUGUAUUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUAAU- -5'
8572 5' -43.5 NC_002169.1 + 42031 1.01 0.1295
Target:  5'- cUCGAUGAAAGCAAAGAUCGUGUAUg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUAau -5'
8572 5' -43.5 NC_002169.1 + 105441 1 0.137141
Target:  5'- uUCGACGAAAGCAAAGAUUGUGUAUg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUAau -5'
8572 5' -43.5 NC_002169.1 + 105255 0.98 0.181873
Target:  5'- uUCGAUGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 105569 0.98 0.181873
Target:  5'- -gGAUGAAAGCAAAGAUCGUGUAUUAa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUAAU- -5'
8572 5' -43.5 NC_002169.1 + 71797 0.98 0.186996
Target:  5'- cUCGAUGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 105376 0.96 0.220468
Target:  5'- gUCGACGAucuuggacaaAAGCAAAGAUCGUGUAUUAa -3'
miRNA:   3'- -AGCUGCU----------UUCGUUUCUAGCACAUAAU- -5'
8572 5' -43.5 NC_002169.1 + 104927 0.96 0.232713
Target:  5'- gUCGACGAAAGCAAAGAUCaUGUAUUGa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUAAU- -5'
8572 5' -43.5 NC_002169.1 + 11332 0.95 0.258916
Target:  5'- gUCGACGAAAGCAAAGAUCGUGcAUUu -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACaUAAu -5'
8572 5' -43.5 NC_002169.1 + 120199 0.94 0.272899
Target:  5'- -gGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 11096 0.94 0.272899
Target:  5'- -gGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 11602 0.94 0.272899
Target:  5'- -gGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 42032 0.94 0.272899
Target:  5'- -gGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 119580 0.94 0.272899
Target:  5'- -gGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUaau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.