miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8572 5' -43.5 NC_002169.1 + 3665 0.7 0.999765
Target:  5'- uUCGACGGAuuguuguuGCAcGGGUgGUGUGUa- -3'
miRNA:   3'- -AGCUGCUUu-------CGUuUCUAgCACAUAau -5'
8572 5' -43.5 NC_002169.1 + 4197 0.71 0.999036
Target:  5'- gCGGCGGAGGCGAAGGacuuggugaUgGUGUAa-- -3'
miRNA:   3'- aGCUGCUUUCGUUUCU---------AgCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 5686 0.66 0.999999
Target:  5'- cUUGACGAGcaguAGCAcuugacugaacgccAAGAUCGuUGUAUg- -3'
miRNA:   3'- -AGCUGCUU----UCGU--------------UUCUAGC-ACAUAau -5'
8572 5' -43.5 NC_002169.1 + 9601 0.67 0.999997
Target:  5'- aCGAUGggGGUAAuGAaaaauucaaagUCGUGUGUc- -3'
miRNA:   3'- aGCUGCuuUCGUUuCU-----------AGCACAUAau -5'
8572 5' -43.5 NC_002169.1 + 10551 0.72 0.99881
Target:  5'- -aGAUGAAAGCAAAcAUUGUGUAc-- -3'
miRNA:   3'- agCUGCUUUCGUUUcUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 10679 0.89 0.476592
Target:  5'- gUCGAUGAAAGCAAAGAUCGuUGUGg-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGC-ACAUaau -5'
8572 5' -43.5 NC_002169.1 + 10741 0.89 0.487089
Target:  5'- uUCGACGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUaau -5'
8572 5' -43.5 NC_002169.1 + 10849 0.85 0.687334
Target:  5'- gUCGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUaau -5'
8572 5' -43.5 NC_002169.1 + 10868 0.73 0.996831
Target:  5'- -gGACG-AAGCAAAGAUCGaguacuagaguuuUGUAUUGc -3'
miRNA:   3'- agCUGCuUUCGUUUCUAGC-------------ACAUAAU- -5'
8572 5' -43.5 NC_002169.1 + 10969 0.8 0.883891
Target:  5'- uUCGACGAAA-CAAAGAUCaUGUAUUAa -3'
miRNA:   3'- -AGCUGCUUUcGUUUCUAGcACAUAAU- -5'
8572 5' -43.5 NC_002169.1 + 10978 0.88 0.552125
Target:  5'- cUCGACGAAAGCAAAcAUCGUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUcUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 11068 0.89 0.487089
Target:  5'- uUCGACGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUaau -5'
8572 5' -43.5 NC_002169.1 + 11096 0.94 0.272899
Target:  5'- -gGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 11196 0.83 0.784372
Target:  5'- -gGACGAAAGCAAAGAUCGaGUAc-- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCaCAUaau -5'
8572 5' -43.5 NC_002169.1 + 11204 0.89 0.487089
Target:  5'- -gGACGAAAGCAAAGAUCaUGUAUUAa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGcACAUAAU- -5'
8572 5' -43.5 NC_002169.1 + 11315 1.02 0.10888
Target:  5'- uUCGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 11332 0.95 0.258916
Target:  5'- gUCGACGAAAGCAAAGAUCGUGcAUUu -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACaUAAu -5'
8572 5' -43.5 NC_002169.1 + 11445 1.01 0.1295
Target:  5'- gUCGAUGAAAGCAAAGAUUGUGUAUUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUAAU- -5'
8572 5' -43.5 NC_002169.1 + 11474 0.71 0.999612
Target:  5'- gUCGAUGAAAGCAAAcAUCaUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUcUAGcACAUaau -5'
8572 5' -43.5 NC_002169.1 + 11602 0.94 0.272899
Target:  5'- -gGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.