miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8572 5' -43.5 NC_002169.1 + 104869 0.83 0.753089
Target:  5'- -gGACGAAAGCAAAGAUCGaGUAg-- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCaCAUaau -5'
8572 5' -43.5 NC_002169.1 + 53076 0.88 0.519206
Target:  5'- -gGACGAAAGCAAAGAUCaUGUAUUGa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGcACAUAAU- -5'
8572 5' -43.5 NC_002169.1 + 42222 0.85 0.653531
Target:  5'- -gGACGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAuaau -5'
8572 5' -43.5 NC_002169.1 + 42291 0.85 0.653531
Target:  5'- -gGACGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAuaau -5'
8572 5' -43.5 NC_002169.1 + 119354 0.85 0.664835
Target:  5'- uUCGAUaAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -AGCUGcUUUCGUUUCUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 10849 0.85 0.687334
Target:  5'- gUCGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUaau -5'
8572 5' -43.5 NC_002169.1 + 119452 0.85 0.687334
Target:  5'- uUCGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUaau -5'
8572 5' -43.5 NC_002169.1 + 52932 0.84 0.720631
Target:  5'- cUCGAUGAAAGCAAAGAUUGaGUAUg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCaCAUAau -5'
8572 5' -43.5 NC_002169.1 + 104987 0.84 0.720631
Target:  5'- uUCGAUGAAAGCAAAGAUCaUGUGc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUaau -5'
8572 5' -43.5 NC_002169.1 + 52815 0.89 0.487089
Target:  5'- cUCGAUGAAAGCAAAGAUgGUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAgCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 11204 0.89 0.487089
Target:  5'- -gGACGAAAGCAAAGAUCaUGUAUUAa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGcACAUAAU- -5'
8572 5' -43.5 NC_002169.1 + 11068 0.89 0.487089
Target:  5'- uUCGACGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUaau -5'
8572 5' -43.5 NC_002169.1 + 105532 1.05 0.076554
Target:  5'- uUCGAUGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUAAU- -5'
8572 5' -43.5 NC_002169.1 + 11315 1.02 0.10888
Target:  5'- uUCGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 105236 1.02 0.10888
Target:  5'- gUCGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 11604 1.02 0.115387
Target:  5'- -gGACGAAAGCAAAGAUCGUGUAUUAu -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUAAU- -5'
8572 5' -43.5 NC_002169.1 + 105441 1 0.137141
Target:  5'- uUCGACGAAAGCAAAGAUUGUGUAUg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUAau -5'
8572 5' -43.5 NC_002169.1 + 42032 0.94 0.272899
Target:  5'- -gGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 119635 0.94 0.272899
Target:  5'- -gGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 10741 0.89 0.487089
Target:  5'- uUCGACGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.