miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8572 5' -43.5 NC_002169.1 + 120058 0.66 1
Target:  5'- aCGACGAAgugGGCAuacgugugGAGAUCGUa----- -3'
miRNA:   3'- aGCUGCUU---UCGU--------UUCUAGCAcauaau -5'
8572 5' -43.5 NC_002169.1 + 119482 0.84 0.742384
Target:  5'- -gGACGAAAGCAAAGAUCGUcUAUg- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCAcAUAau -5'
8572 5' -43.5 NC_002169.1 + 42419 0.85 0.687334
Target:  5'- gUCGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUaau -5'
8572 5' -43.5 NC_002169.1 + 119762 1.02 0.10888
Target:  5'- uUCGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 77692 0.68 0.999992
Target:  5'- aCGGCGAAAaC-AAGAUUGUGUcgUGu -3'
miRNA:   3'- aGCUGCUUUcGuUUCUAGCACAuaAU- -5'
8572 5' -43.5 NC_002169.1 + 26639 0.68 0.999977
Target:  5'- cUCGGCGAGGGCAAA-AggGUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUcUagCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 53060 0.7 0.999862
Target:  5'- -gGAUGAAAGCAAAGAUgaUGUAc-- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAgcACAUaau -5'
8572 5' -43.5 NC_002169.1 + 70186 0.7 0.999862
Target:  5'- gUCGACGAGGGCAAcaaGUCG-GUGg-- -3'
miRNA:   3'- -AGCUGCUUUCGUUuc-UAGCaCAUaau -5'
8572 5' -43.5 NC_002169.1 + 37283 0.74 0.99392
Target:  5'- aUCGACG-GAGCAGGGAUCGaUGa---- -3'
miRNA:   3'- -AGCUGCuUUCGUUUCUAGC-ACauaau -5'
8572 5' -43.5 NC_002169.1 + 52825 0.84 0.742384
Target:  5'- uUCGAUGAAAGCAAAcAUCGUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUcUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 105481 0.75 0.983636
Target:  5'- -gGACGAAAGCAAAcAUUGUGUAc-- -3'
miRNA:   3'- agCUGCUUUCGUUUcUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 10868 0.73 0.996831
Target:  5'- -gGACG-AAGCAAAGAUCGaguacuagaguuuUGUAUUGc -3'
miRNA:   3'- agCUGCuUUCGUUUCUAGC-------------ACAUAAU- -5'
8572 5' -43.5 NC_002169.1 + 53559 0.66 0.999999
Target:  5'- cUCGGCGgcAGCu-GGAUCGcaaucucgGUGUUGa -3'
miRNA:   3'- -AGCUGCuuUCGuuUCUAGCa-------CAUAAU- -5'
8572 5' -43.5 NC_002169.1 + 105115 0.81 0.842096
Target:  5'- -gGACGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGcACAUaau -5'
8572 5' -43.5 NC_002169.1 + 134956 0.66 0.999999
Target:  5'- gUCGcCGAGAGCGGAGAcauugguuUCGauaaaaucaaauUGUAUUGc -3'
miRNA:   3'- -AGCuGCUUUCGUUUCU--------AGC------------ACAUAAU- -5'
8572 5' -43.5 NC_002169.1 + 118888 0.71 0.999508
Target:  5'- aUCGAUGAGAGCcuguAGAUCGgccGUGa-- -3'
miRNA:   3'- -AGCUGCUUUCGuu--UCUAGCa--CAUaau -5'
8572 5' -43.5 NC_002169.1 + 11196 0.83 0.784372
Target:  5'- -gGACGAAAGCAAAGAUCGaGUAc-- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCaCAUaau -5'
8572 5' -43.5 NC_002169.1 + 42350 0.85 0.698505
Target:  5'- cUCGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUaau -5'
8572 5' -43.5 NC_002169.1 + 25796 0.67 0.999998
Target:  5'- -aGGCGAGccGGCAugcGGGAUCGgGUAUUu -3'
miRNA:   3'- agCUGCUU--UCGU---UUCUAGCaCAUAAu -5'
8572 5' -43.5 NC_002169.1 + 129825 0.68 0.999969
Target:  5'- uUCGAcugaaCGAAcGCGacGAGAUCGUGUGc-- -3'
miRNA:   3'- -AGCU-----GCUUuCGU--UUCUAGCACAUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.