miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8572 5' -43.5 NC_002169.1 + 11604 1.02 0.115387
Target:  5'- -gGACGAAAGCAAAGAUCGUGUAUUAu -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUAAU- -5'
8572 5' -43.5 NC_002169.1 + 11732 0.87 0.5733
Target:  5'- gUCGAUGAAAGCAAAGAUCGaguacuagaguuuUGUAUUGc -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGC-------------ACAUAAU- -5'
8572 5' -43.5 NC_002169.1 + 25103 0.66 0.999999
Target:  5'- gCGGCGAGAGUGugucAGAUCGUcucGUGg-- -3'
miRNA:   3'- aGCUGCUUUCGUu---UCUAGCA---CAUaau -5'
8572 5' -43.5 NC_002169.1 + 25796 0.67 0.999998
Target:  5'- -aGGCGAGccGGCAugcGGGAUCGgGUAUUu -3'
miRNA:   3'- agCUGCUU--UCGU---UUCUAGCaCAUAAu -5'
8572 5' -43.5 NC_002169.1 + 26639 0.68 0.999977
Target:  5'- cUCGGCGAGGGCAAA-AggGUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUcUagCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 37283 0.74 0.99392
Target:  5'- aUCGACG-GAGCAGGGAUCGaUGa---- -3'
miRNA:   3'- -AGCUGCuUUCGUUUCUAGC-ACauaau -5'
8572 5' -43.5 NC_002169.1 + 41904 0.66 1
Target:  5'- -gGACGAAAGCAAA-AUCGaGUAc-- -3'
miRNA:   3'- agCUGCUUUCGUUUcUAGCaCAUaau -5'
8572 5' -43.5 NC_002169.1 + 41928 0.86 0.642206
Target:  5'- -gGACGAAAGCAAAGAUCGaGUAUg- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCaCAUAau -5'
8572 5' -43.5 NC_002169.1 + 42031 1.01 0.1295
Target:  5'- cUCGAUGAAAGCAAAGAUCGUGUAUg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUAau -5'
8572 5' -43.5 NC_002169.1 + 42032 0.94 0.272899
Target:  5'- -gGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 42158 0.91 0.406538
Target:  5'- -aGAUGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 42222 0.85 0.653531
Target:  5'- -gGACGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAuaau -5'
8572 5' -43.5 NC_002169.1 + 42291 0.85 0.653531
Target:  5'- -gGACGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAuaau -5'
8572 5' -43.5 NC_002169.1 + 42350 0.85 0.698505
Target:  5'- cUCGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUaau -5'
8572 5' -43.5 NC_002169.1 + 42419 0.85 0.687334
Target:  5'- gUCGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUaau -5'
8572 5' -43.5 NC_002169.1 + 43984 0.68 0.999984
Target:  5'- gUCGuCGAAAGUAAAGA-CGUGc---- -3'
miRNA:   3'- -AGCuGCUUUCGUUUCUaGCACauaau -5'
8572 5' -43.5 NC_002169.1 + 49559 0.67 0.999996
Target:  5'- aUGGCGggGGCAAuguAGAcgugaaUCGUGUcgAUUGc -3'
miRNA:   3'- aGCUGCuuUCGUU---UCU------AGCACA--UAAU- -5'
8572 5' -43.5 NC_002169.1 + 52698 0.81 0.842096
Target:  5'- -gGACGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGcACAUaau -5'
8572 5' -43.5 NC_002169.1 + 52815 0.89 0.487089
Target:  5'- cUCGAUGAAAGCAAAGAUgGUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAgCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 52825 0.84 0.742384
Target:  5'- uUCGAUGAAAGCAAAcAUCGUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUcUAGCACAUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.