miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8572 5' -43.5 NC_002169.1 + 134956 0.66 0.999999
Target:  5'- gUCGcCGAGAGCGGAGAcauugguuUCGauaaaaucaaauUGUAUUGc -3'
miRNA:   3'- -AGCuGCUUUCGUUUCU--------AGC------------ACAUAAU- -5'
8572 5' -43.5 NC_002169.1 + 129825 0.68 0.999969
Target:  5'- uUCGAcugaaCGAAcGCGacGAGAUCGUGUGc-- -3'
miRNA:   3'- -AGCU-----GCUUuCGU--UUCUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 127910 0.71 0.999224
Target:  5'- gCGGCGAagAAGCAuugaaGGGAUCGUGg---- -3'
miRNA:   3'- aGCUGCU--UUCGU-----UUCUAGCACauaau -5'
8572 5' -43.5 NC_002169.1 + 120199 0.94 0.272899
Target:  5'- -gGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 120071 1.09 0.044706
Target:  5'- uUCGACGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUAAU- -5'
8572 5' -43.5 NC_002169.1 + 120058 0.66 1
Target:  5'- aCGACGAAgugGGCAuacgugugGAGAUCGUa----- -3'
miRNA:   3'- aGCUGCUU---UCGU--------UUCUAGCAcauaau -5'
8572 5' -43.5 NC_002169.1 + 119762 1.02 0.10888
Target:  5'- uUCGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 119635 0.94 0.272899
Target:  5'- -gGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 119580 0.94 0.272899
Target:  5'- -gGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 119482 0.84 0.742384
Target:  5'- -gGACGAAAGCAAAGAUCGUcUAUg- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCAcAUAau -5'
8572 5' -43.5 NC_002169.1 + 119452 0.85 0.687334
Target:  5'- uUCGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUaau -5'
8572 5' -43.5 NC_002169.1 + 119354 0.85 0.664835
Target:  5'- uUCGAUaAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -AGCUGcUUUCGUUUCUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 118888 0.71 0.999508
Target:  5'- aUCGAUGAGAGCcuguAGAUCGgccGUGa-- -3'
miRNA:   3'- -AGCUGCUUUCGuu--UCUAGCa--CAUaau -5'
8572 5' -43.5 NC_002169.1 + 105660 0.94 0.272899
Target:  5'- -gGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 105569 0.98 0.181873
Target:  5'- -gGAUGAAAGCAAAGAUCGUGUAUUAa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUAAU- -5'
8572 5' -43.5 NC_002169.1 + 105532 1.05 0.076554
Target:  5'- uUCGAUGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUAAU- -5'
8572 5' -43.5 NC_002169.1 + 105481 0.75 0.983636
Target:  5'- -gGACGAAAGCAAAcAUUGUGUAc-- -3'
miRNA:   3'- agCUGCUUUCGUUUcUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 105441 1 0.137141
Target:  5'- uUCGACGAAAGCAAAGAUUGUGUAUg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUAau -5'
8572 5' -43.5 NC_002169.1 + 105376 0.96 0.220468
Target:  5'- gUCGACGAucuuggacaaAAGCAAAGAUCGUGUAUUAa -3'
miRNA:   3'- -AGCUGCU----------UUCGUUUCUAGCACAUAAU- -5'
8572 5' -43.5 NC_002169.1 + 105255 0.98 0.181873
Target:  5'- uUCGAUGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.