miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8576 5' -50.7 NC_002169.1 + 133809 0.66 0.994714
Target:  5'- uGCCGUCaacaAGugcgUCGAcGUCGACGCc- -3'
miRNA:   3'- -CGGCGGg---UCua--AGCUuUAGUUGCGcc -5'
8576 5' -50.7 NC_002169.1 + 78035 0.66 0.994714
Target:  5'- uCCGCCC-GA--CGAAcgcuUCGACGCGa -3'
miRNA:   3'- cGGCGGGuCUaaGCUUu---AGUUGCGCc -5'
8576 5' -50.7 NC_002169.1 + 41483 0.66 0.994634
Target:  5'- aUCGCCC-GAUgccuauuUCGAAGUUAGCGUa- -3'
miRNA:   3'- cGGCGGGuCUA-------AGCUUUAGUUGCGcc -5'
8576 5' -50.7 NC_002169.1 + 53415 0.66 0.99378
Target:  5'- uGCCGCCgagaauguaugcuCAGAUcaaaagccggUCGGGA--AACGCGGc -3'
miRNA:   3'- -CGGCGG-------------GUCUA----------AGCUUUagUUGCGCC- -5'
8576 5' -50.7 NC_002169.1 + 53655 0.66 0.99292
Target:  5'- -aCGCCggCGGAUUCG-GAUCGAC-CGGc -3'
miRNA:   3'- cgGCGG--GUCUAAGCuUUAGUUGcGCC- -5'
8576 5' -50.7 NC_002169.1 + 18389 0.66 0.99292
Target:  5'- gGCgGCCguGAaUgGGuuAUCGACGUGGa -3'
miRNA:   3'- -CGgCGGguCUaAgCUu-UAGUUGCGCC- -5'
8576 5' -50.7 NC_002169.1 + 56758 0.67 0.990671
Target:  5'- cGgCGCCCGcGUUuaCGAGAUCGGCGuCGa -3'
miRNA:   3'- -CgGCGGGUcUAA--GCUUUAGUUGC-GCc -5'
8576 5' -50.7 NC_002169.1 + 1056 0.67 0.989354
Target:  5'- cGCUGCUCGucgacgacGGUUCGAcggCGACGCGc -3'
miRNA:   3'- -CGGCGGGU--------CUAAGCUuuaGUUGCGCc -5'
8576 5' -50.7 NC_002169.1 + 45689 0.67 0.986287
Target:  5'- uGUCGCCgAGAccuucgacgguUUCGAGuAUCuGCGCGa -3'
miRNA:   3'- -CGGCGGgUCU-----------AAGCUU-UAGuUGCGCc -5'
8576 5' -50.7 NC_002169.1 + 26212 0.67 0.986287
Target:  5'- cGCCGCCgauCAG-UUCGAGAUCGuuccACGUc- -3'
miRNA:   3'- -CGGCGG---GUCuAAGCUUUAGU----UGCGcc -5'
8576 5' -50.7 NC_002169.1 + 46129 0.67 0.986287
Target:  5'- cGCuCGCCCAGuc-CGAGacGUCGGuCGCGc -3'
miRNA:   3'- -CG-GCGGGUCuaaGCUU--UAGUU-GCGCc -5'
8576 5' -50.7 NC_002169.1 + 35116 0.67 0.986287
Target:  5'- cGCaauGCCCAGuAUUgCGAAcgCGACGCc- -3'
miRNA:   3'- -CGg--CGGGUC-UAA-GCUUuaGUUGCGcc -5'
8576 5' -50.7 NC_002169.1 + 19369 0.67 0.984334
Target:  5'- cGCCGCCCAuuuucauGAUUUGu--UCGuAgGCGGu -3'
miRNA:   3'- -CGGCGGGU-------CUAAGCuuuAGU-UgCGCC- -5'
8576 5' -50.7 NC_002169.1 + 60785 0.68 0.982584
Target:  5'- -gCGCCgAGAUggCGGcaauGUCcGCGCGGg -3'
miRNA:   3'- cgGCGGgUCUAa-GCUu---UAGuUGCGCC- -5'
8576 5' -50.7 NC_002169.1 + 8865 0.68 0.980472
Target:  5'- cCCGUCUAGAc-CGAGAUCGGCGauGa -3'
miRNA:   3'- cGGCGGGUCUaaGCUUUAGUUGCgcC- -5'
8576 5' -50.7 NC_002169.1 + 126791 0.68 0.972709
Target:  5'- cGCgCGCCCAGAUcgucgacagugugUCGAAAUCGcuauCGUuuuGGu -3'
miRNA:   3'- -CG-GCGGGUCUA-------------AGCUUUAGUu---GCG---CC- -5'
8576 5' -50.7 NC_002169.1 + 77705 0.69 0.970087
Target:  5'- aGCCGCCU----UCGAGA-CAGCGCa- -3'
miRNA:   3'- -CGGCGGGucuaAGCUUUaGUUGCGcc -5'
8576 5' -50.7 NC_002169.1 + 45946 0.69 0.963626
Target:  5'- cGCCGCcgCCAGA-UCGAGA---GCGCGa -3'
miRNA:   3'- -CGGCG--GGUCUaAGCUUUaguUGCGCc -5'
8576 5' -50.7 NC_002169.1 + 85596 0.69 0.956249
Target:  5'- cCCGCCgGGAUUCuaucaGGAUCcGCGCGa -3'
miRNA:   3'- cGGCGGgUCUAAGc----UUUAGuUGCGCc -5'
8576 5' -50.7 NC_002169.1 + 82692 0.71 0.92826
Target:  5'- uGUCGgCCAGAUcgUCGAAuGUUAugGUGGc -3'
miRNA:   3'- -CGGCgGGUCUA--AGCUU-UAGUugCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.