miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8657 3' -42.8 NC_002229.2 + 173122 1.13 0.033918
Target:  5'- cAACAAAAAGGCGCCAAAAAAUUGCGCg -3'
miRNA:   3'- -UUGUUUUUCCGCGGUUUUUUAACGCG- -5'
8657 3' -42.8 NC_002229.2 + 139492 1.13 0.033918
Target:  5'- cAACAAAAAGGCGCCAAAAAAUUGCGCg -3'
miRNA:   3'- -UUGUUUUUCCGCGGUUUUUUAACGCG- -5'
8657 3' -42.8 NC_002229.2 + 173159 0.79 0.948716
Target:  5'- uAUAAGAAucgugguguuGGCGCCAAAAAA-UGCGCg -3'
miRNA:   3'- uUGUUUUU----------CCGCGGUUUUUUaACGCG- -5'
8657 3' -42.8 NC_002229.2 + 139455 0.79 0.948716
Target:  5'- uAUAAGAAucgugguguuGGCGCCAAAAAA-UGCGCg -3'
miRNA:   3'- uUGUUUUU----------CCGCGGUUUUUUaACGCG- -5'
8657 3' -42.8 NC_002229.2 + 84082 0.76 0.988217
Target:  5'- gAACGAGAAGGCaacucGCCAuGAAAcUGUGCu -3'
miRNA:   3'- -UUGUUUUUCCG-----CGGUuUUUUaACGCG- -5'
8657 3' -42.8 NC_002229.2 + 139716 0.75 0.996615
Target:  5'- cGCAGAAAaaGCGCCAAAcAAUgGCGCg -3'
miRNA:   3'- uUGUUUUUc-CGCGGUUUuUUAaCGCG- -5'
8657 3' -42.8 NC_002229.2 + 172898 0.75 0.996615
Target:  5'- cGCAGAAAaaGCGCCAAAcAAUgGCGCg -3'
miRNA:   3'- uUGUUUUUc-CGCGGUUUuUUAaCGCG- -5'
8657 3' -42.8 NC_002229.2 + 124810 0.73 0.998693
Target:  5'- uGGCGAGAcGGGCGCCAGGAugucUUGCu- -3'
miRNA:   3'- -UUGUUUU-UCCGCGGUUUUuu--AACGcg -5'
8657 3' -42.8 NC_002229.2 + 138424 0.72 0.999738
Target:  5'- gAGCAGAGAGGgGCCGG-----UGCGg -3'
miRNA:   3'- -UUGUUUUUCCgCGGUUuuuuaACGCg -5'
8657 3' -42.8 NC_002229.2 + 288 0.72 0.999738
Target:  5'- gAGCAGAGAGGgGCCGG-----UGCGg -3'
miRNA:   3'- -UUGUUUUUCCgCGGUUuuuuaACGCg -5'
8657 3' -42.8 NC_002229.2 + 89480 0.71 0.999845
Target:  5'- uGGCAu---GGCgGCUGAuAAGUUGCGCa -3'
miRNA:   3'- -UUGUuuuuCCG-CGGUUuUUUAACGCG- -5'
8657 3' -42.8 NC_002229.2 + 137881 0.71 0.999879
Target:  5'- cGCAGGGGGGCGCgGGGGuugccccGGggGCGCc -3'
miRNA:   3'- uUGUUUUUCCGCGgUUUU-------UUaaCGCG- -5'
8657 3' -42.8 NC_002229.2 + 830 0.71 0.999879
Target:  5'- cGCAGGGGGGCGCgGGGGuugccccGGggGCGCc -3'
miRNA:   3'- uUGUUUUUCCGCGgUUUU-------UUaaCGCG- -5'
8657 3' -42.8 NC_002229.2 + 120082 0.71 0.999882
Target:  5'- cAGCAu---GGCGCCGAAuauAUUGCacGCa -3'
miRNA:   3'- -UUGUuuuuCCGCGGUUUuu-UAACG--CG- -5'
8657 3' -42.8 NC_002229.2 + 61417 0.7 0.999951
Target:  5'- --gAAAGAGGUGaCUGAAAuGUUGCGUg -3'
miRNA:   3'- uugUUUUUCCGC-GGUUUUuUAACGCG- -5'
8657 3' -42.8 NC_002229.2 + 12517 0.7 0.999974
Target:  5'- cGGCGAGAaaugcgGGGaCGCCGAGAuga-GCGCu -3'
miRNA:   3'- -UUGUUUU------UCC-GCGGUUUUuuaaCGCG- -5'
8657 3' -42.8 NC_002229.2 + 126275 0.68 0.999998
Target:  5'- gGugGAAAAGGgGCgGAGGGcc-GCGCa -3'
miRNA:   3'- -UugUUUUUCCgCGgUUUUUuaaCGCG- -5'
8657 3' -42.8 NC_002229.2 + 19456 0.68 0.999998
Target:  5'- aAGCAuuGAGuuGCCGGAcuGGAUgaUGCGCa -3'
miRNA:   3'- -UUGUuuUUCcgCGGUUU--UUUA--ACGCG- -5'
8657 3' -42.8 NC_002229.2 + 19232 0.68 0.999998
Target:  5'- uAGCAAGcuGGgGUU--GGAAUUGCGCa -3'
miRNA:   3'- -UUGUUUuuCCgCGGuuUUUUAACGCG- -5'
8657 3' -42.8 NC_002229.2 + 12437 0.68 0.999998
Target:  5'- gGugGAAAAGGgGCgGAGGGcc-GCGCa -3'
miRNA:   3'- -UugUUUUUCCgCGgUUUUUuaaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.