Results 1 - 20 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8657 | 3' | -42.8 | NC_002229.2 | + | 288 | 0.72 | 0.999738 |
Target: 5'- gAGCAGAGAGGgGCCGG-----UGCGg -3' miRNA: 3'- -UUGUUUUUCCgCGGUUuuuuaACGCg -5' |
|||||||
8657 | 3' | -42.8 | NC_002229.2 | + | 767 | 0.68 | 0.999999 |
Target: 5'- cGCGGAGguGGGCGCuCGAGcccGGUcccUGCGCa -3' miRNA: 3'- uUGUUUU--UCCGCG-GUUUu--UUA---ACGCG- -5' |
|||||||
8657 | 3' | -42.8 | NC_002229.2 | + | 830 | 0.71 | 0.999879 |
Target: 5'- cGCAGGGGGGCGCgGGGGuugccccGGggGCGCc -3' miRNA: 3'- uUGUUUUUCCGCGgUUUU-------UUaaCGCG- -5' |
|||||||
8657 | 3' | -42.8 | NC_002229.2 | + | 2330 | 0.68 | 0.999999 |
Target: 5'- gAGCAGuuGGGGCGgCAAAAAugcagGCGUu -3' miRNA: 3'- -UUGUUu-UUCCGCgGUUUUUuaa--CGCG- -5' |
|||||||
8657 | 3' | -42.8 | NC_002229.2 | + | 3953 | 0.66 | 1 |
Target: 5'- aAGCAGucuGGgGCCGAGAGAUguUGCc- -3' miRNA: 3'- -UUGUUuuuCCgCGGUUUUUUA--ACGcg -5' |
|||||||
8657 | 3' | -42.8 | NC_002229.2 | + | 8331 | 0.67 | 1 |
Target: 5'- -uCGGAAu-GCGCCAGAccuucuUUGCGCg -3' miRNA: 3'- uuGUUUUucCGCGGUUUuuu---AACGCG- -5' |
|||||||
8657 | 3' | -42.8 | NC_002229.2 | + | 12437 | 0.68 | 0.999998 |
Target: 5'- gGugGAAAAGGgGCgGAGGGcc-GCGCa -3' miRNA: 3'- -UugUUUUUCCgCGgUUUUUuaaCGCG- -5' |
|||||||
8657 | 3' | -42.8 | NC_002229.2 | + | 12517 | 0.7 | 0.999974 |
Target: 5'- cGGCGAGAaaugcgGGGaCGCCGAGAuga-GCGCu -3' miRNA: 3'- -UUGUUUU------UCC-GCGGUUUUuuaaCGCG- -5' |
|||||||
8657 | 3' | -42.8 | NC_002229.2 | + | 19232 | 0.68 | 0.999998 |
Target: 5'- uAGCAAGcuGGgGUU--GGAAUUGCGCa -3' miRNA: 3'- -UUGUUUuuCCgCGGuuUUUUAACGCG- -5' |
|||||||
8657 | 3' | -42.8 | NC_002229.2 | + | 19307 | 0.66 | 1 |
Target: 5'- uGCGAGAAGG-GCCcucagcacAAGGUUGCGa -3' miRNA: 3'- uUGUUUUUCCgCGGuu------UUUUAACGCg -5' |
|||||||
8657 | 3' | -42.8 | NC_002229.2 | + | 19456 | 0.68 | 0.999998 |
Target: 5'- aAGCAuuGAGuuGCCGGAcuGGAUgaUGCGCa -3' miRNA: 3'- -UUGUuuUUCcgCGGUUU--UUUA--ACGCG- -5' |
|||||||
8657 | 3' | -42.8 | NC_002229.2 | + | 29581 | 0.67 | 1 |
Target: 5'- aGGCAGuuuGGGCGUCAAucAAGUaacaucGCGCa -3' miRNA: 3'- -UUGUUuu-UCCGCGGUUu-UUUAa-----CGCG- -5' |
|||||||
8657 | 3' | -42.8 | NC_002229.2 | + | 34051 | 0.68 | 0.999998 |
Target: 5'- aGACA---AGGCGCCAAuauuccaugucuAUUGCGg -3' miRNA: 3'- -UUGUuuuUCCGCGGUUuuu---------UAACGCg -5' |
|||||||
8657 | 3' | -42.8 | NC_002229.2 | + | 52736 | 0.66 | 1 |
Target: 5'- cGAC-GGGAGGUGCCGAuuucauaGAAAUUGUa- -3' miRNA: 3'- -UUGuUUUUCCGCGGUU-------UUUUAACGcg -5' |
|||||||
8657 | 3' | -42.8 | NC_002229.2 | + | 61417 | 0.7 | 0.999951 |
Target: 5'- --gAAAGAGGUGaCUGAAAuGUUGCGUg -3' miRNA: 3'- uugUUUUUCCGC-GGUUUUuUAACGCG- -5' |
|||||||
8657 | 3' | -42.8 | NC_002229.2 | + | 84082 | 0.76 | 0.988217 |
Target: 5'- gAACGAGAAGGCaacucGCCAuGAAAcUGUGCu -3' miRNA: 3'- -UUGUUUUUCCG-----CGGUuUUUUaACGCG- -5' |
|||||||
8657 | 3' | -42.8 | NC_002229.2 | + | 89480 | 0.71 | 0.999845 |
Target: 5'- uGGCAu---GGCgGCUGAuAAGUUGCGCa -3' miRNA: 3'- -UUGUuuuuCCG-CGGUUuUUUAACGCG- -5' |
|||||||
8657 | 3' | -42.8 | NC_002229.2 | + | 95549 | 0.66 | 1 |
Target: 5'- aGGCGAu--GGCGgCGAAAGAU-GCGg -3' miRNA: 3'- -UUGUUuuuCCGCgGUUUUUUAaCGCg -5' |
|||||||
8657 | 3' | -42.8 | NC_002229.2 | + | 120082 | 0.71 | 0.999882 |
Target: 5'- cAGCAu---GGCGCCGAAuauAUUGCacGCa -3' miRNA: 3'- -UUGUuuuuCCGCGGUUUuu-UAACG--CG- -5' |
|||||||
8657 | 3' | -42.8 | NC_002229.2 | + | 124810 | 0.73 | 0.998693 |
Target: 5'- uGGCGAGAcGGGCGCCAGGAugucUUGCu- -3' miRNA: 3'- -UUGUUUU-UCCGCGGUUUUuu--AACGcg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home