Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8657 | 3' | -42.8 | NC_002229.2 | + | 173693 | 0.67 | 1 |
Target: 5'- cGCGAGAGGGUuagagGCCG------UGCGCa -3' miRNA: 3'- uUGUUUUUCCG-----CGGUuuuuuaACGCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 173159 | 0.79 | 0.948716 |
Target: 5'- uAUAAGAAucgugguguuGGCGCCAAAAAA-UGCGCg -3' miRNA: 3'- uUGUUUUU----------CCGCGGUUUUUUaACGCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 173122 | 1.13 | 0.033918 |
Target: 5'- cAACAAAAAGGCGCCAAAAAAUUGCGCg -3' miRNA: 3'- -UUGUUUUUCCGCGGUUUUUUAACGCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 172924 | 0.67 | 1 |
Target: 5'- cGCAAuuuuuuGGCGCCuuuuuGUUGgCGCg -3' miRNA: 3'- uUGUUuuu---CCGCGGuuuuuUAAC-GCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 172898 | 0.75 | 0.996615 |
Target: 5'- cGCAGAAAaaGCGCCAAAcAAUgGCGCg -3' miRNA: 3'- uUGUUUUUc-CGCGGUUUuUUAaCGCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 171591 | 0.66 | 1 |
Target: 5'- -------cGGCagaGCCAAAAGAacaUUGCGCu -3' miRNA: 3'- uuguuuuuCCG---CGGUUUUUU---AACGCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 169557 | 0.67 | 1 |
Target: 5'- -cCAGAGAGGaugauugguccauaGCCGAGGGAUgggcgGUGCu -3' miRNA: 3'- uuGUUUUUCCg-------------CGGUUUUUUAa----CGCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 167585 | 0.66 | 1 |
Target: 5'- cGCAAAcAGGCGUgGAGGAGga-CGCc -3' miRNA: 3'- uUGUUUuUCCGCGgUUUUUUaacGCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 164543 | 0.66 | 1 |
Target: 5'- cAGCGGGGAcGGgGCCGcuGGAAAgcgaGCGCu -3' miRNA: 3'- -UUGUUUUU-CCgCGGU--UUUUUaa--CGCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 162414 | 0.66 | 1 |
Target: 5'- aGACAAAcc-GCGaCCAAAAAA--GCGCg -3' miRNA: 3'- -UUGUUUuucCGC-GGUUUUUUaaCGCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 150200 | 0.66 | 1 |
Target: 5'- aGACAAAcc-GCGaCCAAAAAA--GCGCg -3' miRNA: 3'- -UUGUUUuucCGC-GGUUUUUUaaCGCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 148071 | 0.66 | 1 |
Target: 5'- cAGCGGGGAcGGgGCCGcuGGAAAgcgaGCGCu -3' miRNA: 3'- -UUGUUUUU-CCgCGGU--UUUUUaa--CGCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 147510 | 0.67 | 1 |
Target: 5'- --gGAGAGGGUGCCcucaag--GCGCu -3' miRNA: 3'- uugUUUUUCCGCGGuuuuuuaaCGCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 145030 | 0.66 | 1 |
Target: 5'- cGCAAAcAGGCGUgGAGGAGga-CGCc -3' miRNA: 3'- uUGUUUuUCCGCGgUUUUUUaacGCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 143057 | 0.67 | 1 |
Target: 5'- -cCAGAGAGGaugauugguccauaGCCGAGGGAUgggcgGUGCu -3' miRNA: 3'- uuGUUUUUCCg-------------CGGUUUUUUAa----CGCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 141024 | 0.66 | 1 |
Target: 5'- -------cGGCagaGCCAAAAGAacaUUGCGCu -3' miRNA: 3'- uuguuuuuCCG---CGGUUUUUU---AACGCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 139716 | 0.75 | 0.996615 |
Target: 5'- cGCAGAAAaaGCGCCAAAcAAUgGCGCg -3' miRNA: 3'- uUGUUUUUc-CGCGGUUUuUUAaCGCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 139690 | 0.67 | 1 |
Target: 5'- cGCAAuuuuuuGGCGCCuuuuuGUUGgCGCg -3' miRNA: 3'- uUGUUuuu---CCGCGGuuuuuUAAC-GCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 139492 | 1.13 | 0.033918 |
Target: 5'- cAACAAAAAGGCGCCAAAAAAUUGCGCg -3' miRNA: 3'- -UUGUUUUUCCGCGGUUUUUUAACGCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 139455 | 0.79 | 0.948716 |
Target: 5'- uAUAAGAAucgugguguuGGCGCCAAAAAA-UGCGCg -3' miRNA: 3'- uUGUUUUU----------CCGCGGUUUUUUaACGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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