miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8657 3' -42.8 NC_002229.2 + 139492 1.13 0.033918
Target:  5'- cAACAAAAAGGCGCCAAAAAAUUGCGCg -3'
miRNA:   3'- -UUGUUUUUCCGCGGUUUUUUAACGCG- -5'
8657 3' -42.8 NC_002229.2 + 143057 0.67 1
Target:  5'- -cCAGAGAGGaugauugguccauaGCCGAGGGAUgggcgGUGCu -3'
miRNA:   3'- uuGUUUUUCCg-------------CGGUUUUUUAa----CGCG- -5'
8657 3' -42.8 NC_002229.2 + 52736 0.66 1
Target:  5'- cGAC-GGGAGGUGCCGAuuucauaGAAAUUGUa- -3'
miRNA:   3'- -UUGuUUUUCCGCGGUU-------UUUUAACGcg -5'
8657 3' -42.8 NC_002229.2 + 150200 0.66 1
Target:  5'- aGACAAAcc-GCGaCCAAAAAA--GCGCg -3'
miRNA:   3'- -UUGUUUuucCGC-GGUUUUUUaaCGCG- -5'
8657 3' -42.8 NC_002229.2 + 137881 0.71 0.999879
Target:  5'- cGCAGGGGGGCGCgGGGGuugccccGGggGCGCc -3'
miRNA:   3'- uUGUUUUUCCGCGgUUUU-------UUaaCGCG- -5'
8657 3' -42.8 NC_002229.2 + 120082 0.71 0.999882
Target:  5'- cAGCAu---GGCGCCGAAuauAUUGCacGCa -3'
miRNA:   3'- -UUGUuuuuCCGCGGUUUuu-UAACG--CG- -5'
8657 3' -42.8 NC_002229.2 + 12437 0.68 0.999998
Target:  5'- gGugGAAAAGGgGCgGAGGGcc-GCGCa -3'
miRNA:   3'- -UugUUUUUCCgCGgUUUUUuaaCGCG- -5'
8657 3' -42.8 NC_002229.2 + 19232 0.68 0.999998
Target:  5'- uAGCAAGcuGGgGUU--GGAAUUGCGCa -3'
miRNA:   3'- -UUGUUUuuCCgCGGuuUUUUAACGCG- -5'
8657 3' -42.8 NC_002229.2 + 136382 0.68 0.999999
Target:  5'- gAGCAGuuGGGGCGgCAAAAAugcagGCGUu -3'
miRNA:   3'- -UUGUUu-UUCCGCgGUUUUUuaa--CGCG- -5'
8657 3' -42.8 NC_002229.2 + 8331 0.67 1
Target:  5'- -uCGGAAu-GCGCCAGAccuucuUUGCGCg -3'
miRNA:   3'- uuGUUUUucCGCGGUUUuuu---AACGCG- -5'
8657 3' -42.8 NC_002229.2 + 172924 0.67 1
Target:  5'- cGCAAuuuuuuGGCGCCuuuuuGUUGgCGCg -3'
miRNA:   3'- uUGUUuuu---CCGCGGuuuuuUAAC-GCG- -5'
8657 3' -42.8 NC_002229.2 + 767 0.68 0.999999
Target:  5'- cGCGGAGguGGGCGCuCGAGcccGGUcccUGCGCa -3'
miRNA:   3'- uUGUUUU--UCCGCG-GUUUu--UUA---ACGCG- -5'
8657 3' -42.8 NC_002229.2 + 139455 0.79 0.948716
Target:  5'- uAUAAGAAucgugguguuGGCGCCAAAAAA-UGCGCg -3'
miRNA:   3'- uUGUUUUU----------CCGCGGUUUUUUaACGCG- -5'
8657 3' -42.8 NC_002229.2 + 138921 0.67 1
Target:  5'- cGCGAGAGGGUuagagGCCG------UGCGCa -3'
miRNA:   3'- uUGUUUUUCCG-----CGGUuuuuuaACGCG- -5'
8657 3' -42.8 NC_002229.2 + 172898 0.75 0.996615
Target:  5'- cGCAGAAAaaGCGCCAAAcAAUgGCGCg -3'
miRNA:   3'- uUGUUUUUc-CGCGGUUUuUUAaCGCG- -5'
8657 3' -42.8 NC_002229.2 + 34051 0.68 0.999998
Target:  5'- aGACA---AGGCGCCAAuauuccaugucuAUUGCGg -3'
miRNA:   3'- -UUGUuuuUCCGCGGUUuuu---------UAACGCg -5'
8657 3' -42.8 NC_002229.2 + 29581 0.67 1
Target:  5'- aGGCAGuuuGGGCGUCAAucAAGUaacaucGCGCa -3'
miRNA:   3'- -UUGUUuu-UCCGCGGUUu-UUUAa-----CGCG- -5'
8657 3' -42.8 NC_002229.2 + 171591 0.66 1
Target:  5'- -------cGGCagaGCCAAAAGAacaUUGCGCu -3'
miRNA:   3'- uuguuuuuCCG---CGGUUUUUU---AACGCG- -5'
8657 3' -42.8 NC_002229.2 + 138424 0.72 0.999738
Target:  5'- gAGCAGAGAGGgGCCGG-----UGCGg -3'
miRNA:   3'- -UUGUUUUUCCgCGGUUuuuuaACGCg -5'
8657 3' -42.8 NC_002229.2 + 12517 0.7 0.999974
Target:  5'- cGGCGAGAaaugcgGGGaCGCCGAGAuga-GCGCu -3'
miRNA:   3'- -UUGUUUU------UCC-GCGGUUUUuuaaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.