Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8657 | 3' | -42.8 | NC_002229.2 | + | 139716 | 0.75 | 0.996615 |
Target: 5'- cGCAGAAAaaGCGCCAAAcAAUgGCGCg -3' miRNA: 3'- uUGUUUUUc-CGCGGUUUuUUAaCGCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 137945 | 0.68 | 0.999999 |
Target: 5'- cGCGGAGguGGGCGCuCGAGcccGGUcccUGCGCa -3' miRNA: 3'- uUGUUUU--UCCGCG-GUUUu--UUA---ACGCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 19456 | 0.68 | 0.999998 |
Target: 5'- aAGCAuuGAGuuGCCGGAcuGGAUgaUGCGCa -3' miRNA: 3'- -UUGUuuUUCcgCGGUUU--UUUA--ACGCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 126275 | 0.68 | 0.999998 |
Target: 5'- gGugGAAAAGGgGCgGAGGGcc-GCGCa -3' miRNA: 3'- -UugUUUUUCCgCGgUUUUUuaaCGCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 61417 | 0.7 | 0.999951 |
Target: 5'- --gAAAGAGGUGaCUGAAAuGUUGCGUg -3' miRNA: 3'- uugUUUUUCCGC-GGUUUUuUAACGCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 830 | 0.71 | 0.999879 |
Target: 5'- cGCAGGGGGGCGCgGGGGuugccccGGggGCGCc -3' miRNA: 3'- uUGUUUUUCCGCGgUUUU-------UUaaCGCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 89480 | 0.71 | 0.999845 |
Target: 5'- uGGCAu---GGCgGCUGAuAAGUUGCGCa -3' miRNA: 3'- -UUGUuuuuCCG-CGGUUuUUUAACGCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 288 | 0.72 | 0.999738 |
Target: 5'- gAGCAGAGAGGgGCCGG-----UGCGg -3' miRNA: 3'- -UUGUUUUUCCgCGGUUuuuuaACGCg -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 124810 | 0.73 | 0.998693 |
Target: 5'- uGGCGAGAcGGGCGCCAGGAugucUUGCu- -3' miRNA: 3'- -UUGUUUU-UCCGCGGUUUUuu--AACGcg -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 2330 | 0.68 | 0.999999 |
Target: 5'- gAGCAGuuGGGGCGgCAAAAAugcagGCGUu -3' miRNA: 3'- -UUGUUu-UUCCGCgGUUUUUuaa--CGCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 126195 | 0.67 | 0.999999 |
Target: 5'- cGGCGAGAaaugcgGGGaCGCCAGAuga--GCGCu -3' miRNA: 3'- -UUGUUUU------UCC-GCGGUUUuuuaaCGCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 139690 | 0.67 | 1 |
Target: 5'- cGCAAuuuuuuGGCGCCuuuuuGUUGgCGCg -3' miRNA: 3'- uUGUUuuu---CCGCGGuuuuuUAAC-GCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 95549 | 0.66 | 1 |
Target: 5'- aGGCGAu--GGCGgCGAAAGAU-GCGg -3' miRNA: 3'- -UUGUUuuuCCGCgGUUUUUUAaCGCg -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 134759 | 0.66 | 1 |
Target: 5'- aAGCAGucuGGgGCCGAGAGAUguUGCc- -3' miRNA: 3'- -UUGUUuuuCCgCGGUUUUUUA--ACGcg -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 145030 | 0.66 | 1 |
Target: 5'- cGCAAAcAGGCGUgGAGGAGga-CGCc -3' miRNA: 3'- uUGUUUuUCCGCGgUUUUUUaacGCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 164543 | 0.66 | 1 |
Target: 5'- cAGCGGGGAcGGgGCCGcuGGAAAgcgaGCGCu -3' miRNA: 3'- -UUGUUUUU-CCgCGGU--UUUUUaa--CGCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 141024 | 0.66 | 1 |
Target: 5'- -------cGGCagaGCCAAAAGAacaUUGCGCu -3' miRNA: 3'- uuguuuuuCCG---CGGUUUUUU---AACGCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 169557 | 0.67 | 1 |
Target: 5'- -cCAGAGAGGaugauugguccauaGCCGAGGGAUgggcgGUGCu -3' miRNA: 3'- uuGUUUUUCCg-------------CGGUUUUUUAa----CGCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 130380 | 0.67 | 1 |
Target: 5'- -uCGGAAu-GCGCCAGAccuucuUUGCGCg -3' miRNA: 3'- uuGUUUUucCGCGGUUUuuu---AACGCG- -5' |
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8657 | 3' | -42.8 | NC_002229.2 | + | 173693 | 0.67 | 1 |
Target: 5'- cGCGAGAGGGUuagagGCCG------UGCGCa -3' miRNA: 3'- uUGUUUUUCCG-----CGGUuuuuuaACGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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