miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8792 5' -56.6 NC_002484.1 + 52399 0.69 0.513585
Target:  5'- gGCCGAUGCCGgACagcagGGAAAggcucAGCGUc -3'
miRNA:   3'- -CGGCUGCGGCgUGg----CCUUUac---UCGCG- -5'
8792 5' -56.6 NC_002484.1 + 51854 0.68 0.565964
Target:  5'- gGUCGGCGauggccuuCCGCGCCGGcu-UG-GCGUg -3'
miRNA:   3'- -CGGCUGC--------GGCGUGGCCuuuACuCGCG- -5'
8792 5' -56.6 NC_002484.1 + 47850 0.66 0.650922
Target:  5'- cGuuGGCGCCGCgauaccaaauuugGCUGGugcGAUucGCGCg -3'
miRNA:   3'- -CggCUGCGGCG-------------UGGCCu--UUAcuCGCG- -5'
8792 5' -56.6 NC_002484.1 + 45906 0.71 0.388636
Target:  5'- aUUGGCGuCCGC-CUGuGggGUGAGUGCg -3'
miRNA:   3'- cGGCUGC-GGCGuGGC-CuuUACUCGCG- -5'
8792 5' -56.6 NC_002484.1 + 42195 0.69 0.460362
Target:  5'- cGCCGACGCCGCccugGCCaagcuggccgaacuGGAAAagcagGAGC-Cg -3'
miRNA:   3'- -CGGCUGCGGCG----UGG--------------CCUUUa----CUCGcG- -5'
8792 5' -56.6 NC_002484.1 + 41685 0.71 0.397532
Target:  5'- gGCCGAgcugcucgcCGCCGCGCCcGGcAAGgaggGGGUGUg -3'
miRNA:   3'- -CGGCU---------GCGGCGUGG-CC-UUUa---CUCGCG- -5'
8792 5' -56.6 NC_002484.1 + 41158 0.7 0.443912
Target:  5'- uCCG-CGCgCGC-CCGGAAAUGGaCGCc -3'
miRNA:   3'- cGGCuGCG-GCGuGGCCUUUACUcGCG- -5'
8792 5' -56.6 NC_002484.1 + 38337 0.76 0.179688
Target:  5'- gGCuCGACGCCGCAgCGGAugcGAGaaaGCa -3'
miRNA:   3'- -CG-GCUGCGGCGUgGCCUuuaCUCg--CG- -5'
8792 5' -56.6 NC_002484.1 + 36995 0.75 0.23329
Target:  5'- cGCCGAagcUGCCGC-CCGcGAGcagaagGAGCGCg -3'
miRNA:   3'- -CGGCU---GCGGCGuGGC-CUUua----CUCGCG- -5'
8792 5' -56.6 NC_002484.1 + 36857 0.68 0.565964
Target:  5'- gGCCGcCGCUgaGCGCCGGGAAcUGGaauuGCGa -3'
miRNA:   3'- -CGGCuGCGG--CGUGGCCUUU-ACU----CGCg -5'
8792 5' -56.6 NC_002484.1 + 36707 0.7 0.453549
Target:  5'- gGCCGACGa-GCagGCCaGGAuc-GAGCGCg -3'
miRNA:   3'- -CGGCUGCggCG--UGG-CCUuuaCUCGCG- -5'
8792 5' -56.6 NC_002484.1 + 36608 0.67 0.587325
Target:  5'- cGCCGGCGgcaUGC-CCGGGGAau-GCGCc -3'
miRNA:   3'- -CGGCUGCg--GCGuGGCCUUUacuCGCG- -5'
8792 5' -56.6 NC_002484.1 + 35823 0.67 0.630412
Target:  5'- uUCGAUGCgGCACUGGcacggcuuaccAAGgcucgcGAGCGCg -3'
miRNA:   3'- cGGCUGCGgCGUGGCC-----------UUUa-----CUCGCG- -5'
8792 5' -56.6 NC_002484.1 + 34279 0.66 0.694884
Target:  5'- cGCCGACGaaGCGCUuGAuuacuacaAGCGCa -3'
miRNA:   3'- -CGGCUGCggCGUGGcCUuuac----UCGCG- -5'
8792 5' -56.6 NC_002484.1 + 34004 0.68 0.57342
Target:  5'- aGCCcagGGCGCCGaaggcguucuggucUAcCCGGAAGUGGGUGa -3'
miRNA:   3'- -CGG---CUGCGGC--------------GU-GGCCUUUACUCGCg -5'
8792 5' -56.6 NC_002484.1 + 33417 0.7 0.453549
Target:  5'- cGCCcuGGCGaUCGCAUccucggcgcagaCGGAAcAUGAGCGCg -3'
miRNA:   3'- -CGG--CUGC-GGCGUG------------GCCUU-UACUCGCG- -5'
8792 5' -56.6 NC_002484.1 + 33292 0.73 0.299722
Target:  5'- uGCUGAUGuUCGCGgCGGAuuUGaAGCGCg -3'
miRNA:   3'- -CGGCUGC-GGCGUgGCCUuuAC-UCGCG- -5'
8792 5' -56.6 NC_002484.1 + 33148 0.67 0.598063
Target:  5'- aGCaGGCGgaGCgGCCGGAGGUGguGGCGUa -3'
miRNA:   3'- -CGgCUGCggCG-UGGCCUUUAC--UCGCG- -5'
8792 5' -56.6 NC_002484.1 + 33031 0.66 0.673517
Target:  5'- aCUGGCGUgagCGCgGCUGcGAGGUGAGCGa -3'
miRNA:   3'- cGGCUGCG---GCG-UGGC-CUUUACUCGCg -5'
8792 5' -56.6 NC_002484.1 + 32902 0.69 0.463298
Target:  5'- aGCgCGACGCCGCcCUGGcca-GGGuCGCg -3'
miRNA:   3'- -CG-GCUGCGGCGuGGCCuuuaCUC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.