Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8808 | 5' | -60.8 | NC_002484.1 | + | 40417 | 0.66 | 0.432851 |
Target: 5'- gUGGCGGCGCUgcuuUCGUcgGGCCgCUgACUc -3' miRNA: 3'- -ACCGUCGCGGuu--AGCG--UCGG-GGgUGG- -5' |
|||||||
8808 | 5' | -60.8 | NC_002484.1 | + | 42202 | 0.7 | 0.222321 |
Target: 5'- gGGaCcGCGCCGA-CGCcGCCCUgGCCa -3' miRNA: 3'- aCC-GuCGCGGUUaGCGuCGGGGgUGG- -5' |
|||||||
8808 | 5' | -60.8 | NC_002484.1 | + | 43389 | 0.71 | 0.195431 |
Target: 5'- -aGCAGCacuaGCCAAcCGCaAGCCUCCAUCa -3' miRNA: 3'- acCGUCG----CGGUUaGCG-UCGGGGGUGG- -5' |
|||||||
8808 | 5' | -60.8 | NC_002484.1 | + | 44477 | 0.68 | 0.299745 |
Target: 5'- gGGCGGCGCCGucaGCuaccgagacGGCCCUCgaauacggucGCCa -3' miRNA: 3'- aCCGUCGCGGUuagCG---------UCGGGGG----------UGG- -5' |
|||||||
8808 | 5' | -60.8 | NC_002484.1 | + | 45223 | 0.68 | 0.292565 |
Target: 5'- aGGCAGUaucccuGCCugggaGCAGCaCCCUACUa -3' miRNA: 3'- aCCGUCG------CGGuuag-CGUCG-GGGGUGG- -5' |
|||||||
8808 | 5' | -60.8 | NC_002484.1 | + | 52092 | 0.68 | 0.329824 |
Target: 5'- aGGCGGUGCUcgg-GCcuuGCCCCCuuGCCg -3' miRNA: 3'- aCCGUCGCGGuuagCGu--CGGGGG--UGG- -5' |
|||||||
8808 | 5' | -60.8 | NC_002484.1 | + | 52212 | 0.67 | 0.378997 |
Target: 5'- aGGCcgauGCGCuCGAUCa-AGCCCUCACg -3' miRNA: 3'- aCCGu---CGCG-GUUAGcgUCGGGGGUGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home