miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8808 5' -60.8 NC_002484.1 + 8822 0.67 0.345678
Target:  5'- ---uGGCGCCGgaAUCGgugacgaaaCGGCCUCCGCCg -3'
miRNA:   3'- accgUCGCGGU--UAGC---------GUCGGGGGUGG- -5'
8808 5' -60.8 NC_002484.1 + 52212 0.67 0.378997
Target:  5'- aGGCcgauGCGCuCGAUCa-AGCCCUCACg -3'
miRNA:   3'- aCCGu---CGCG-GUUAGcgUCGGGGGUGg -5'
8808 5' -60.8 NC_002484.1 + 14009 0.67 0.378997
Target:  5'- -aGCAuUGCCucacuGUCGUugAGCCUCCACCu -3'
miRNA:   3'- acCGUcGCGGu----UAGCG--UCGGGGGUGG- -5'
8808 5' -60.8 NC_002484.1 + 9513 0.66 0.387657
Target:  5'- aGuGCGGCGUCGGggcauUCGCAGUCUUguCCg -3'
miRNA:   3'- aC-CGUCGCGGUU-----AGCGUCGGGGguGG- -5'
8808 5' -60.8 NC_002484.1 + 6549 0.66 0.405361
Target:  5'- uUGGCAG-GCCucGUCuuCGGCCCCU-CCa -3'
miRNA:   3'- -ACCGUCgCGGu-UAGc-GUCGGGGGuGG- -5'
8808 5' -60.8 NC_002484.1 + 6956 0.66 0.431918
Target:  5'- cUGGCAGUggucuccGCCug-CGUAGCgUCCGCa -3'
miRNA:   3'- -ACCGUCG-------CGGuuaGCGUCGgGGGUGg -5'
8808 5' -60.8 NC_002484.1 + 40417 0.66 0.432851
Target:  5'- gUGGCGGCGCUgcuuUCGUcgGGCCgCUgACUc -3'
miRNA:   3'- -ACCGUCGCGGuu--AGCG--UCGG-GGgUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.