Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8808 | 5' | -60.8 | NC_002484.1 | + | 8822 | 0.67 | 0.345678 |
Target: 5'- ---uGGCGCCGgaAUCGgugacgaaaCGGCCUCCGCCg -3' miRNA: 3'- accgUCGCGGU--UAGC---------GUCGGGGGUGG- -5' |
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8808 | 5' | -60.8 | NC_002484.1 | + | 52212 | 0.67 | 0.378997 |
Target: 5'- aGGCcgauGCGCuCGAUCa-AGCCCUCACg -3' miRNA: 3'- aCCGu---CGCG-GUUAGcgUCGGGGGUGg -5' |
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8808 | 5' | -60.8 | NC_002484.1 | + | 14009 | 0.67 | 0.378997 |
Target: 5'- -aGCAuUGCCucacuGUCGUugAGCCUCCACCu -3' miRNA: 3'- acCGUcGCGGu----UAGCG--UCGGGGGUGG- -5' |
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8808 | 5' | -60.8 | NC_002484.1 | + | 9513 | 0.66 | 0.387657 |
Target: 5'- aGuGCGGCGUCGGggcauUCGCAGUCUUguCCg -3' miRNA: 3'- aC-CGUCGCGGUU-----AGCGUCGGGGguGG- -5' |
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8808 | 5' | -60.8 | NC_002484.1 | + | 6549 | 0.66 | 0.405361 |
Target: 5'- uUGGCAG-GCCucGUCuuCGGCCCCU-CCa -3' miRNA: 3'- -ACCGUCgCGGu-UAGc-GUCGGGGGuGG- -5' |
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8808 | 5' | -60.8 | NC_002484.1 | + | 6956 | 0.66 | 0.431918 |
Target: 5'- cUGGCAGUggucuccGCCug-CGUAGCgUCCGCa -3' miRNA: 3'- -ACCGUCG-------CGGuuaGCGUCGgGGGUGg -5' |
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8808 | 5' | -60.8 | NC_002484.1 | + | 40417 | 0.66 | 0.432851 |
Target: 5'- gUGGCGGCGCUgcuuUCGUcgGGCCgCUgACUc -3' miRNA: 3'- -ACCGUCGCGGuu--AGCG--UCGG-GGgUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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