miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8874 5' -60.5 NC_002484.1 + 54162 0.66 0.4825
Target:  5'- uUGCGCC-AUACCGGCUuauuGGCUGacGCGg -3'
miRNA:   3'- uGCGUGGcUAUGGCUGGu---CCGGC--CGC- -5'
8874 5' -60.5 NC_002484.1 + 395 0.66 0.4825
Target:  5'- cCGgGCCaGAUuuCCGAUCAGGUgGGUGu -3'
miRNA:   3'- uGCgUGG-CUAu-GGCUGGUCCGgCCGC- -5'
8874 5' -60.5 NC_002484.1 + 51881 0.66 0.472761
Target:  5'- uACGCGCCuuGAUcucCCGGCgGuugcGGUCGGCGa -3'
miRNA:   3'- -UGCGUGG--CUAu--GGCUGgU----CCGGCCGC- -5'
8874 5' -60.5 NC_002484.1 + 17967 0.66 0.471792
Target:  5'- gGCGCGCUGAUGCUGAUCcucaguGGaCCauccauguucugcGGCGa -3'
miRNA:   3'- -UGCGUGGCUAUGGCUGGu-----CC-GG-------------CCGC- -5'
8874 5' -60.5 NC_002484.1 + 27914 0.66 0.463122
Target:  5'- aGCGCACaggcugGAUGCCGGCgCAuccCCGGCa -3'
miRNA:   3'- -UGCGUGg-----CUAUGGCUG-GUcc-GGCCGc -5'
8874 5' -60.5 NC_002484.1 + 17556 0.66 0.444159
Target:  5'- gACG-ACCGAUACCugacGGCCAuuguugugacGCCGGCGu -3'
miRNA:   3'- -UGCgUGGCUAUGG----CUGGUc---------CGGCCGC- -5'
8874 5' -60.5 NC_002484.1 + 19092 0.66 0.434843
Target:  5'- cGCGauaGCCGAUcaucCCGgcGCCAGcGCUGGUGg -3'
miRNA:   3'- -UGCg--UGGCUAu---GGC--UGGUC-CGGCCGC- -5'
8874 5' -60.5 NC_002484.1 + 53003 0.66 0.434843
Target:  5'- aGCGCACUGAUGgacUCGACCuucuuGGCCuuGUGa -3'
miRNA:   3'- -UGCGUGGCUAU---GGCUGGu----CCGGc-CGC- -5'
8874 5' -60.5 NC_002484.1 + 50751 0.67 0.416555
Target:  5'- cUGCcUCGGUcGCCggGACCAGGCCcugGGCGg -3'
miRNA:   3'- uGCGuGGCUA-UGG--CUGGUCCGG---CCGC- -5'
8874 5' -60.5 NC_002484.1 + 54766 0.67 0.415653
Target:  5'- aACGCACagcaGGUAUgCGAgCCAGGacacuccCCGGCGa -3'
miRNA:   3'- -UGCGUGg---CUAUG-GCU-GGUCC-------GGCCGC- -5'
8874 5' -60.5 NC_002484.1 + 16993 0.67 0.411161
Target:  5'- cGCGgGCCGAUugcugcauuuccggaGCCGgucugcaacGCauuGGCCGGCGa -3'
miRNA:   3'- -UGCgUGGCUA---------------UGGC---------UGgu-CCGGCCGC- -5'
8874 5' -60.5 NC_002484.1 + 36747 0.67 0.40759
Target:  5'- gGCGCGCCGAagaagccacUGCCGcagagcgccaacGgCAGGCCGaCGa -3'
miRNA:   3'- -UGCGUGGCU---------AUGGC------------UgGUCCGGCcGC- -5'
8874 5' -60.5 NC_002484.1 + 33539 0.67 0.40759
Target:  5'- -gGCACCGGUA--GAgCAGGCaGGCGg -3'
miRNA:   3'- ugCGUGGCUAUggCUgGUCCGgCCGC- -5'
8874 5' -60.5 NC_002484.1 + 32563 0.67 0.40759
Target:  5'- uGCGCACCGugcucGCCG-CCGcGCCcGGCa -3'
miRNA:   3'- -UGCGUGGCua---UGGCuGGUcCGG-CCGc -5'
8874 5' -60.5 NC_002484.1 + 2681 0.67 0.381431
Target:  5'- -aGCAUCGAUG-CGACCAuGGCCuGCc -3'
miRNA:   3'- ugCGUGGCUAUgGCUGGU-CCGGcCGc -5'
8874 5' -60.5 NC_002484.1 + 35501 0.67 0.380579
Target:  5'- uGCGCACaGAUACUGAgCCAGaucagauccagcaGUCGGCa -3'
miRNA:   3'- -UGCGUGgCUAUGGCU-GGUC-------------CGGCCGc -5'
8874 5' -60.5 NC_002484.1 + 50817 0.68 0.362149
Target:  5'- uGCGCAuccgggugaauuucCCGuggaCGACCuGGCCGGCc -3'
miRNA:   3'- -UGCGU--------------GGCuaugGCUGGuCCGGCCGc -5'
8874 5' -60.5 NC_002484.1 + 29271 0.69 0.317347
Target:  5'- uCGUACCGAUcCCucuCCAGcCCGGCGg -3'
miRNA:   3'- uGCGUGGCUAuGGcu-GGUCcGGCCGC- -5'
8874 5' -60.5 NC_002484.1 + 5165 0.69 0.316599
Target:  5'- cGCGCAUCGAUguagcucugcaagGCCGAagcgucguCCAGGauCUGGCGa -3'
miRNA:   3'- -UGCGUGGCUA-------------UGGCU--------GGUCC--GGCCGC- -5'
8874 5' -60.5 NC_002484.1 + 4213 0.69 0.288477
Target:  5'- uCGCGCCc--GCCGAuCCAGGUcuCGGCGu -3'
miRNA:   3'- uGCGUGGcuaUGGCU-GGUCCG--GCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.