miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8901 3' -53.5 NC_002484.1 + 27373 0.66 0.828345
Target:  5'- aCCUGCGCCacaccugCGCGGC-AUGGCUg -3'
miRNA:   3'- -GGAUGCGGccgca--GUGUUGuUACCGG- -5'
8901 3' -53.5 NC_002484.1 + 51839 0.66 0.828345
Target:  5'- uCC-GCGCCGGCuUgGCGuGCuuguccuuGAUGGCCa -3'
miRNA:   3'- -GGaUGCGGCCGcAgUGU-UG--------UUACCGG- -5'
8901 3' -53.5 NC_002484.1 + 18261 0.66 0.822874
Target:  5'- cUCUGCGCCaGGCcagggccgggaacaUCGcCGGCAagGGCCa -3'
miRNA:   3'- -GGAUGCGG-CCGc-------------AGU-GUUGUuaCCGG- -5'
8901 3' -53.5 NC_002484.1 + 35550 0.66 0.809831
Target:  5'- --aGCGCCaGGgGUCACAAgcuUGaGCCg -3'
miRNA:   3'- ggaUGCGG-CCgCAGUGUUguuAC-CGG- -5'
8901 3' -53.5 NC_002484.1 + 17527 0.67 0.780686
Target:  5'- --gACGCCGGCGUaggACGACGGagcuggaGGCg -3'
miRNA:   3'- ggaUGCGGCCGCAg--UGUUGUUa------CCGg -5'
8901 3' -53.5 NC_002484.1 + 18354 0.67 0.770648
Target:  5'- --aGCGCUGGCGaguuCAGCAGUGaCCa -3'
miRNA:   3'- ggaUGCGGCCGCagu-GUUGUUACcGG- -5'
8901 3' -53.5 NC_002484.1 + 10972 0.67 0.760467
Target:  5'- aCCUcgGCGaucaCGGUGagCAgGGCGAUGGUCa -3'
miRNA:   3'- -GGA--UGCg---GCCGCa-GUgUUGUUACCGG- -5'
8901 3' -53.5 NC_002484.1 + 50990 0.68 0.750154
Target:  5'- -gUACGCggcgaCGGCGUUcuGCAAU--UGGCCa -3'
miRNA:   3'- ggAUGCG-----GCCGCAG--UGUUGuuACCGG- -5'
8901 3' -53.5 NC_002484.1 + 9920 0.68 0.739721
Target:  5'- gCUGCaucuCUGGCcucCGCAGCGGUGGCUg -3'
miRNA:   3'- gGAUGc---GGCCGca-GUGUUGUUACCGG- -5'
8901 3' -53.5 NC_002484.1 + 36615 0.68 0.739721
Target:  5'- cCCUGauCGCCGGCGgCAUgcccgGGgAAUGcGCCa -3'
miRNA:   3'- -GGAU--GCGGCCGCaGUG-----UUgUUAC-CGG- -5'
8901 3' -53.5 NC_002484.1 + 47854 0.68 0.739721
Target:  5'- aCC-ACGuuGGCGcCGCGAUAccaaauuUGGCUg -3'
miRNA:   3'- -GGaUGCggCCGCaGUGUUGUu------ACCGG- -5'
8901 3' -53.5 NC_002484.1 + 34912 0.68 0.729179
Target:  5'- --aGCGCCGGCcagACGACAcccaGGCCg -3'
miRNA:   3'- ggaUGCGGCCGcagUGUUGUua--CCGG- -5'
8901 3' -53.5 NC_002484.1 + 4358 0.68 0.729179
Target:  5'- aUUGCGCUGGCuUCGCGGCAuuccGCUg -3'
miRNA:   3'- gGAUGCGGCCGcAGUGUUGUuac-CGG- -5'
8901 3' -53.5 NC_002484.1 + 12214 0.68 0.729179
Target:  5'- gCCUACaaGCUGGaaggcUC-CAACAGUGGCUa -3'
miRNA:   3'- -GGAUG--CGGCCgc---AGuGUUGUUACCGG- -5'
8901 3' -53.5 NC_002484.1 + 43162 0.68 0.71854
Target:  5'- gCCUgaugGCuaCGGUGaUCAUGGCcGUGGCCg -3'
miRNA:   3'- -GGA----UGcgGCCGC-AGUGUUGuUACCGG- -5'
8901 3' -53.5 NC_002484.1 + 13465 0.68 0.707816
Target:  5'- gCCgcCGCCGGgG-C-CAACAGcgGGCCu -3'
miRNA:   3'- -GGauGCGGCCgCaGuGUUGUUa-CCGG- -5'
8901 3' -53.5 NC_002484.1 + 49386 0.69 0.664288
Target:  5'- uCCUGuuuUGCgGGCGUCACugcuCGAUccucccuucaGGCCa -3'
miRNA:   3'- -GGAU---GCGgCCGCAGUGuu--GUUA----------CCGG- -5'
8901 3' -53.5 NC_002484.1 + 35439 0.69 0.653303
Target:  5'- gCUAuuCGCCGGauggccuaGUCgGCGACAAcGGCCu -3'
miRNA:   3'- gGAU--GCGGCCg-------CAG-UGUUGUUaCCGG- -5'
8901 3' -53.5 NC_002484.1 + 52148 0.69 0.653303
Target:  5'- aCUUGCuggaGCCGGCGUUACA-----GGCCu -3'
miRNA:   3'- -GGAUG----CGGCCGCAGUGUuguuaCCGG- -5'
8901 3' -53.5 NC_002484.1 + 46901 0.7 0.627982
Target:  5'- cCCUGCguucaccgguugcaGCCGGCG-CACG-CAAUGaaaGCCg -3'
miRNA:   3'- -GGAUG--------------CGGCCGCaGUGUuGUUAC---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.