miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8942 5' -52.5 NC_002512.2 + 143460 0.66 0.995693
Target:  5'- -gCGCCccgUCCgCUCgucaUCUCUCG-GCg -3'
miRNA:   3'- cgGCGGa--AGGaGAGaa--AGAGAGCaCG- -5'
8942 5' -52.5 NC_002512.2 + 191857 0.66 0.995693
Target:  5'- uCCGgCguccCCUCUCUUUUgUCUCGcGCa -3'
miRNA:   3'- cGGCgGaa--GGAGAGAAAG-AGAGCaCG- -5'
8942 5' -52.5 NC_002512.2 + 198524 0.66 0.995693
Target:  5'- gGUCGCCUUCgaUCUCcag--CUCGUGg -3'
miRNA:   3'- -CGGCGGAAGg-AGAGaaagaGAGCACg -5'
8942 5' -52.5 NC_002512.2 + 6817 0.66 0.995003
Target:  5'- aCCGCCUucUCCgagcggCUCUUUCU-UCGUa- -3'
miRNA:   3'- cGGCGGA--AGGa-----GAGAAAGAgAGCAcg -5'
8942 5' -52.5 NC_002512.2 + 107972 0.66 0.995003
Target:  5'- cGCCGCCUcgUCCcgCUCg--CUCccCGcGCg -3'
miRNA:   3'- -CGGCGGA--AGGa-GAGaaaGAGa-GCaCG- -5'
8942 5' -52.5 NC_002512.2 + 17499 0.66 0.995003
Target:  5'- gGCCGCC-UCCUCga--UCUCgacgUCG-GCg -3'
miRNA:   3'- -CGGCGGaAGGAGagaaAGAG----AGCaCG- -5'
8942 5' -52.5 NC_002512.2 + 129367 0.66 0.995003
Target:  5'- cGUCGCCUUCUg-------UCUCGUGCg -3'
miRNA:   3'- -CGGCGGAAGGagagaaagAGAGCACG- -5'
8942 5' -52.5 NC_002512.2 + 3457 0.66 0.994228
Target:  5'- cGCCGCCcccucaUCCUUUCUcgccaUCUCcaUCGUcGCc -3'
miRNA:   3'- -CGGCGGa-----AGGAGAGAa----AGAG--AGCA-CG- -5'
8942 5' -52.5 NC_002512.2 + 167640 0.66 0.993357
Target:  5'- cGUCGCCcagcucgUCCUCUCgucgucCUCUCGcaggacGCg -3'
miRNA:   3'- -CGGCGGa------AGGAGAGaaa---GAGAGCa-----CG- -5'
8942 5' -52.5 NC_002512.2 + 39982 0.66 0.993357
Target:  5'- aGCCGCCgUCCUCgccgCcgUC-CUCGccGCc -3'
miRNA:   3'- -CGGCGGaAGGAGa---GaaAGaGAGCa-CG- -5'
8942 5' -52.5 NC_002512.2 + 108514 0.66 0.992385
Target:  5'- cGUCGCCcUCCUCUCcggccCUCUCc-GCc -3'
miRNA:   3'- -CGGCGGaAGGAGAGaaa--GAGAGcaCG- -5'
8942 5' -52.5 NC_002512.2 + 180629 0.66 0.992385
Target:  5'- uCCGCgaUCCgCUC-UUCUCUaggGUGCg -3'
miRNA:   3'- cGGCGgaAGGaGAGaAAGAGAg--CACG- -5'
8942 5' -52.5 NC_002512.2 + 177441 0.66 0.992385
Target:  5'- uCCGCCUUCUUUUUcaUCUcCUCGUa- -3'
miRNA:   3'- cGGCGGAAGGAGAGaaAGA-GAGCAcg -5'
8942 5' -52.5 NC_002512.2 + 74517 0.67 0.991303
Target:  5'- cGCCGCCgccCCgacCUCgagCgccgCUCGUGUu -3'
miRNA:   3'- -CGGCGGaa-GGa--GAGaaaGa---GAGCACG- -5'
8942 5' -52.5 NC_002512.2 + 960 0.67 0.991303
Target:  5'- uCCGUCUgUCUCUCUUcucgucguccUCUCUCGcGUc -3'
miRNA:   3'- cGGCGGAaGGAGAGAA----------AGAGAGCaCG- -5'
8942 5' -52.5 NC_002512.2 + 867 0.67 0.991303
Target:  5'- uCCGCCgUCCgCUCUccUCUCUCGc-- -3'
miRNA:   3'- cGGCGGaAGGaGAGAa-AGAGAGCacg -5'
8942 5' -52.5 NC_002512.2 + 107064 0.67 0.988778
Target:  5'- cGCgGCC-UCCaUCUCg--UUCUCGgggGCg -3'
miRNA:   3'- -CGgCGGaAGG-AGAGaaaGAGAGCa--CG- -5'
8942 5' -52.5 NC_002512.2 + 222370 0.67 0.988778
Target:  5'- gGCCGCCUUCCccggcgggCUCUggCUcCUCaUGg -3'
miRNA:   3'- -CGGCGGAAGGa-------GAGAaaGA-GAGcACg -5'
8942 5' -52.5 NC_002512.2 + 122495 0.67 0.987318
Target:  5'- cGCCgGCCUgaaCCUCUCgg--UCUCGgucugGCu -3'
miRNA:   3'- -CGG-CGGAa--GGAGAGaaagAGAGCa----CG- -5'
8942 5' -52.5 NC_002512.2 + 104958 0.67 0.985715
Target:  5'- cGgCGCCggCCUCgug-UCUCUCGUa- -3'
miRNA:   3'- -CgGCGGaaGGAGagaaAGAGAGCAcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.