miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8944 3' -65.1 NC_002512.2 + 80482 0.68 0.476054
Target:  5'- gUCCCCUCGCgGCccgucgaggagccGGaGUCCUGCguccccGCGc -3'
miRNA:   3'- -AGGGGAGCGgCG-------------CC-CAGGACGac----CGC- -5'
8944 3' -65.1 NC_002512.2 + 12597 0.68 0.468325
Target:  5'- aUCUCC-CGgCGCGcGGUCC-GCaUGGCGg -3'
miRNA:   3'- -AGGGGaGCgGCGC-CCAGGaCG-ACCGC- -5'
8944 3' -65.1 NC_002512.2 + 13655 0.68 0.468325
Target:  5'- aCCgUCUCGCCGCGGcUCCaGCUcccggacgaGGCGa -3'
miRNA:   3'- aGG-GGAGCGGCGCCcAGGaCGA---------CCGC- -5'
8944 3' -65.1 NC_002512.2 + 99794 0.69 0.459813
Target:  5'- gCCCUUCacucgGCCGuCGGGUacuaCgaGCUGGCGg -3'
miRNA:   3'- aGGGGAG-----CGGC-GCCCA----GgaCGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 127436 0.69 0.426619
Target:  5'- cUCCuCCgcgaCGCCauGCGGGUCCaGCUGGa- -3'
miRNA:   3'- -AGG-GGa---GCGG--CGCCCAGGaCGACCgc -5'
8944 3' -65.1 NC_002512.2 + 168371 0.66 0.613039
Target:  5'- cUCCUgUCGCaCGCacguggccgucaGGGUCaggUGCUGGUGc -3'
miRNA:   3'- -AGGGgAGCG-GCG------------CCCAGg--ACGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 204975 0.66 0.603691
Target:  5'- gCCCgaCGCCGCGGGcgacggggaCCggaagGCgggGGCGa -3'
miRNA:   3'- aGGGgaGCGGCGCCCa--------GGa----CGa--CCGC- -5'
8944 3' -65.1 NC_002512.2 + 217701 0.66 0.59436
Target:  5'- uUCCCCgccggCGUCGaCGaGGUCC-GCUucaggGGCGg -3'
miRNA:   3'- -AGGGGa----GCGGC-GC-CCAGGaCGA-----CCGC- -5'
8944 3' -65.1 NC_002512.2 + 123111 0.66 0.59436
Target:  5'- aCCCCgaccagUCGCCGCGGG-CCgagaGCcGGaCGc -3'
miRNA:   3'- aGGGG------AGCGGCGCCCaGGa---CGaCC-GC- -5'
8944 3' -65.1 NC_002512.2 + 116187 0.66 0.585053
Target:  5'- gUUCCacgCGCUGCGGG-CCagGCaGGCGg -3'
miRNA:   3'- -AGGGga-GCGGCGCCCaGGa-CGaCCGC- -5'
8944 3' -65.1 NC_002512.2 + 196386 0.67 0.579482
Target:  5'- aCUUCgggaCGCCGCGGGUCUgGCgcggggacgcggggGGCGg -3'
miRNA:   3'- aGGGGa---GCGGCGCCCAGGaCGa-------------CCGC- -5'
8944 3' -65.1 NC_002512.2 + 94668 0.66 0.622399
Target:  5'- -gCCCgggGCCGgGGGgccccccggCCcGCUGGCGg -3'
miRNA:   3'- agGGGag-CGGCgCCCa--------GGaCGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 132516 0.66 0.622399
Target:  5'- gUCUCCggcCGCCGC-GGUCCccGCUccgcgGGCGg -3'
miRNA:   3'- -AGGGGa--GCGGCGcCCAGGa-CGA-----CCGC- -5'
8944 3' -65.1 NC_002512.2 + 184920 0.66 0.622399
Target:  5'- cCCCUUCGCCGaggaccgguguuCGGaGUCC-GcCUGGCu -3'
miRNA:   3'- aGGGGAGCGGC------------GCC-CAGGaC-GACCGc -5'
8944 3' -65.1 NC_002512.2 + 219485 0.66 0.622399
Target:  5'- gCCCCUgGg-GCGGGUCagacgaggaUGCUGGCc -3'
miRNA:   3'- aGGGGAgCggCGCCCAGg--------ACGACCGc -5'
8944 3' -65.1 NC_002512.2 + 137868 0.66 0.622399
Target:  5'- cUCCCCcgaCGcCCGCGaGUCCgccGCcGGCGa -3'
miRNA:   3'- -AGGGGa--GC-GGCGCcCAGGa--CGaCCGC- -5'
8944 3' -65.1 NC_002512.2 + 157351 0.66 0.622399
Target:  5'- uUCCgCCUgGCCGcCGaGGUCCggGCcgccgGGCa -3'
miRNA:   3'- -AGG-GGAgCGGC-GC-CCAGGa-CGa----CCGc -5'
8944 3' -65.1 NC_002512.2 + 165114 0.66 0.629892
Target:  5'- aUCUCUC-CCGCGGGgaacgucauccgCCUGUUcGGCGc -3'
miRNA:   3'- aGGGGAGcGGCGCCCa-----------GGACGA-CCGC- -5'
8944 3' -65.1 NC_002512.2 + 110658 0.66 0.641132
Target:  5'- gCCgCUCGaCCGCGGGcagCCggucCUGGUGc -3'
miRNA:   3'- aGGgGAGC-GGCGCCCa--GGac--GACCGC- -5'
8944 3' -65.1 NC_002512.2 + 226498 1.08 0.000842
Target:  5'- cUCCCCUCGCCGCGGGUCCUGCUGGCGg -3'
miRNA:   3'- -AGGGGAGCGGCGCCCAGGACGACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.