miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8944 3' -65.1 NC_002512.2 + 107217 0.76 0.165906
Target:  5'- gCCCCUCGCCGUcaccuGGUUCUGC-GGCGc -3'
miRNA:   3'- aGGGGAGCGGCGc----CCAGGACGaCCGC- -5'
8944 3' -65.1 NC_002512.2 + 107482 0.66 0.584124
Target:  5'- aUCUCgUCGCCGCGaccggcccgcagcGGUCuCUGC-GGCu -3'
miRNA:   3'- -AGGGgAGCGGCGC-------------CCAG-GACGaCCGc -5'
8944 3' -65.1 NC_002512.2 + 110559 0.68 0.512027
Target:  5'- gCCCC-CGCgCGgGaGGUCCUGCcgGGUc -3'
miRNA:   3'- aGGGGaGCG-GCgC-CCAGGACGa-CCGc -5'
8944 3' -65.1 NC_002512.2 + 110658 0.66 0.641132
Target:  5'- gCCgCUCGaCCGCGGGcagCCggucCUGGUGc -3'
miRNA:   3'- aGGgGAGC-GGCGCCCa--GGac--GACCGC- -5'
8944 3' -65.1 NC_002512.2 + 112779 0.66 0.641132
Target:  5'- gCCCCgUGCCGCugugccGGGUCCag--GGCGg -3'
miRNA:   3'- aGGGGaGCGGCG------CCCAGGacgaCCGC- -5'
8944 3' -65.1 NC_002512.2 + 116187 0.66 0.585053
Target:  5'- gUUCCacgCGCUGCGGG-CCagGCaGGCGg -3'
miRNA:   3'- -AGGGga-GCGGCGCCCaGGa-CGaCCGC- -5'
8944 3' -65.1 NC_002512.2 + 116638 0.74 0.233399
Target:  5'- cCCCCUCGCUGcCGaGGcUCCUGCUGcCGu -3'
miRNA:   3'- aGGGGAGCGGC-GC-CC-AGGACGACcGC- -5'
8944 3' -65.1 NC_002512.2 + 120818 0.69 0.434785
Target:  5'- --aCCUgGCgCGCGGGgaCCUGCUgGGCGa -3'
miRNA:   3'- aggGGAgCG-GCGCCCa-GGACGA-CCGC- -5'
8944 3' -65.1 NC_002512.2 + 120856 0.76 0.162093
Target:  5'- cUCCCCUcgaacgCGCCGCGGGUCC-GCaGGaCGa -3'
miRNA:   3'- -AGGGGA------GCGGCGCCCAGGaCGaCC-GC- -5'
8944 3' -65.1 NC_002512.2 + 121355 0.66 0.613039
Target:  5'- cCUUCUcCGCCGuCGGGUCCccgGCcggucgGGCGc -3'
miRNA:   3'- aGGGGA-GCGGC-GCCCAGGa--CGa-----CCGC- -5'
8944 3' -65.1 NC_002512.2 + 122261 0.67 0.574848
Target:  5'- uUCCCCggcgGCCGCGGGgacgUCCUGgaGcccgucaGCGa -3'
miRNA:   3'- -AGGGGag--CGGCGCCC----AGGACgaC-------CGC- -5'
8944 3' -65.1 NC_002512.2 + 122681 0.7 0.364725
Target:  5'- cUCCCCg-GCCGCGGc-CCgGCUGGUGc -3'
miRNA:   3'- -AGGGGagCGGCGCCcaGGaCGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 123111 0.66 0.59436
Target:  5'- aCCCCgaccagUCGCCGCGGG-CCgagaGCcGGaCGc -3'
miRNA:   3'- aGGGG------AGCGGCGCCCaGGa---CGaCC-GC- -5'
8944 3' -65.1 NC_002512.2 + 124060 0.66 0.641132
Target:  5'- -aCCCUCGUC-UGGGcCCUGCccgggGGCu -3'
miRNA:   3'- agGGGAGCGGcGCCCaGGACGa----CCGc -5'
8944 3' -65.1 NC_002512.2 + 126647 0.69 0.443041
Target:  5'- -gCCCUCGCCGCGGccGUCgacggGC-GGCGa -3'
miRNA:   3'- agGGGAGCGGCGCC--CAGga---CGaCCGC- -5'
8944 3' -65.1 NC_002512.2 + 126904 0.76 0.154703
Target:  5'- cUUCUCUCGCgGCGGGgggaggCCggGCUGGCGa -3'
miRNA:   3'- -AGGGGAGCGgCGCCCa-----GGa-CGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 127436 0.69 0.426619
Target:  5'- cUCCuCCgcgaCGCCauGCGGGUCCaGCUGGa- -3'
miRNA:   3'- -AGG-GGa---GCGG--CGCCCAGGaCGACCgc -5'
8944 3' -65.1 NC_002512.2 + 132004 0.67 0.54816
Target:  5'- gCCCCgggCGCCGgGGGgaCCUcgGC-GGCGa -3'
miRNA:   3'- aGGGGa--GCGGCgCCCa-GGA--CGaCCGC- -5'
8944 3' -65.1 NC_002512.2 + 132450 0.68 0.468325
Target:  5'- cUCCCCg-GCgGCGGGUCCggGgaGcGCGc -3'
miRNA:   3'- -AGGGGagCGgCGCCCAGGa-CgaC-CGC- -5'
8944 3' -65.1 NC_002512.2 + 132516 0.66 0.622399
Target:  5'- gUCUCCggcCGCCGC-GGUCCccGCUccgcgGGCGg -3'
miRNA:   3'- -AGGGGa--GCGGCGcCCAGGa-CGA-----CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.