miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8944 3' -65.1 NC_002512.2 + 69049 0.68 0.503145
Target:  5'- -gCCCagCGCCGCcGGccgcccgCCUGCUGGUGc -3'
miRNA:   3'- agGGGa-GCGGCGcCCa------GGACGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 69765 0.71 0.336192
Target:  5'- gCCaCCUCGCC-CaGGUCCUGCUccaccgucugGGCGu -3'
miRNA:   3'- aGG-GGAGCGGcGcCCAGGACGA----------CCGC- -5'
8944 3' -65.1 NC_002512.2 + 70503 0.67 0.529981
Target:  5'- gCCCCgaCGCCGCGGGaCCcGCgaaugGGaCGc -3'
miRNA:   3'- aGGGGa-GCGGCGCCCaGGaCGa----CC-GC- -5'
8944 3' -65.1 NC_002512.2 + 75312 0.68 0.484716
Target:  5'- gUCgCCCUCGCCGUua-UCCUGCccccccaUGGCGa -3'
miRNA:   3'- -AG-GGGAGCGGCGcccAGGACG-------ACCGC- -5'
8944 3' -65.1 NC_002512.2 + 80482 0.68 0.476054
Target:  5'- gUCCCCUCGCgGCccgucgaggagccGGaGUCCUGCguccccGCGc -3'
miRNA:   3'- -AGGGGAGCGgCG-------------CC-CAGGACGac----CGC- -5'
8944 3' -65.1 NC_002512.2 + 81419 0.66 0.603691
Target:  5'- cUCCCCgcCGUCGCGGcuccGUCCcGCggggGGCc -3'
miRNA:   3'- -AGGGGa-GCGGCGCC----CAGGaCGa---CCGc -5'
8944 3' -65.1 NC_002512.2 + 82664 0.66 0.641132
Target:  5'- cUCCCUCGCUGUuuucGcGGUCCcGCUcgGGCu -3'
miRNA:   3'- aGGGGAGCGGCG----C-CCAGGaCGA--CCGc -5'
8944 3' -65.1 NC_002512.2 + 87083 0.67 0.539044
Target:  5'- uUCCUCggGUCGCGGGgcgaCgUGCUGGgGa -3'
miRNA:   3'- -AGGGGagCGGCGCCCa---GgACGACCgC- -5'
8944 3' -65.1 NC_002512.2 + 87849 0.69 0.443041
Target:  5'- -gCCCUCGCgGCGGGUC--GCcGGCc -3'
miRNA:   3'- agGGGAGCGgCGCCCAGgaCGaCCGc -5'
8944 3' -65.1 NC_002512.2 + 94668 0.66 0.622399
Target:  5'- -gCCCgggGCCGgGGGgccccccggCCcGCUGGCGg -3'
miRNA:   3'- agGGGag-CGGCgCCCa--------GGaCGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 96208 0.72 0.290265
Target:  5'- gCCaCCguggCGuuGCGGGUCgcguuCUGCUGGCa -3'
miRNA:   3'- aGG-GGa---GCggCGCCCAG-----GACGACCGc -5'
8944 3' -65.1 NC_002512.2 + 96579 0.67 0.529981
Target:  5'- aUCCuCCUC-CCGCcucgGGGUCCU-CUGGgGa -3'
miRNA:   3'- -AGG-GGAGcGGCG----CCCAGGAcGACCgC- -5'
8944 3' -65.1 NC_002512.2 + 97858 0.66 0.631765
Target:  5'- gUCCCUggccgacgacgUCGCCGcCGaGGUCCccccgGCgcccggGGCGg -3'
miRNA:   3'- -AGGGG-----------AGCGGC-GC-CCAGGa----CGa-----CCGC- -5'
8944 3' -65.1 NC_002512.2 + 98741 0.66 0.60089
Target:  5'- uUCCUCUCgGCCGCccugccccgccaucGGGUCCUGgCcgucggggGGCa -3'
miRNA:   3'- -AGGGGAG-CGGCG--------------CCCAGGAC-Ga-------CCGc -5'
8944 3' -65.1 NC_002512.2 + 99794 0.69 0.459813
Target:  5'- gCCCUUCacucgGCCGuCGGGUacuaCgaGCUGGCGg -3'
miRNA:   3'- aGGGGAG-----CGGC-GCCCA----GgaCGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 102480 0.67 0.529981
Target:  5'- gCCCgUCGCgGUGgcGGUCCcGCaGGCGg -3'
miRNA:   3'- aGGGgAGCGgCGC--CCAGGaCGaCCGC- -5'
8944 3' -65.1 NC_002512.2 + 105040 0.74 0.20865
Target:  5'- -gUCCUCGUCGCGGG-CCUcGCUcGGCGa -3'
miRNA:   3'- agGGGAGCGGCGCCCaGGA-CGA-CCGC- -5'
8944 3' -65.1 NC_002512.2 + 105334 0.68 0.512027
Target:  5'- cUCCuCCUCGCCGaCGaGGUaggaGUUGGCGu -3'
miRNA:   3'- -AGG-GGAGCGGC-GC-CCAgga-CGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 105910 0.66 0.622399
Target:  5'- cUCUCCggCGuCCgGUGGGUCCUcggGgaGGCGg -3'
miRNA:   3'- -AGGGGa-GC-GG-CGCCCAGGA---CgaCCGC- -5'
8944 3' -65.1 NC_002512.2 + 106045 0.7 0.394888
Target:  5'- aUCCCgUCGCCGCGGGcgcagaUCgUGCgacaGCGc -3'
miRNA:   3'- -AGGGgAGCGGCGCCC------AGgACGac--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.