miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8944 3' -65.1 NC_002512.2 + 44331 0.7 0.387198
Target:  5'- gUCCCCUcgacggccaCGCCGCGGGgCCgGUaGGCc -3'
miRNA:   3'- -AGGGGA---------GCGGCGCCCaGGaCGaCCGc -5'
8944 3' -65.1 NC_002512.2 + 144601 0.7 0.387198
Target:  5'- aUCCCCUCGCa-CGaGGUCCgcgccgcGCUGGaCGu -3'
miRNA:   3'- -AGGGGAGCGgcGC-CCAGGa------CGACC-GC- -5'
8944 3' -65.1 NC_002512.2 + 198100 0.7 0.393342
Target:  5'- cUCCCCgUCGCCGaguaGGGUUUggcccccuugagGUUGGCGa -3'
miRNA:   3'- -AGGGG-AGCGGCg---CCCAGGa-----------CGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 106045 0.7 0.394888
Target:  5'- aUCCCgUCGCCGCGGGcgcagaUCgUGCgacaGCGc -3'
miRNA:   3'- -AGGGgAGCGGCGCCC------AGgACGac--CGC- -5'
8944 3' -65.1 NC_002512.2 + 24911 0.7 0.402678
Target:  5'- gUCCCCgUCGcCCGCGGcGUCggGCUcGGCc -3'
miRNA:   3'- -AGGGG-AGC-GGCGCC-CAGgaCGA-CCGc -5'
8944 3' -65.1 NC_002512.2 + 8452 0.69 0.418544
Target:  5'- gCCCCg-GCCGC-GGUCC-GCaUGGCGg -3'
miRNA:   3'- aGGGGagCGGCGcCCAGGaCG-ACCGC- -5'
8944 3' -65.1 NC_002512.2 + 153257 0.69 0.426619
Target:  5'- -aCCCgaugcgaUGCgGCGGGUCCUggucgGCUGGCu -3'
miRNA:   3'- agGGGa------GCGgCGCCCAGGA-----CGACCGc -5'
8944 3' -65.1 NC_002512.2 + 127436 0.69 0.426619
Target:  5'- cUCCuCCgcgaCGCCauGCGGGUCCaGCUGGa- -3'
miRNA:   3'- -AGG-GGa---GCGG--CGCCCAGGaCGACCgc -5'
8944 3' -65.1 NC_002512.2 + 120818 0.69 0.434785
Target:  5'- --aCCUgGCgCGCGGGgaCCUGCUgGGCGa -3'
miRNA:   3'- aggGGAgCG-GCGCCCa-GGACGA-CCGC- -5'
8944 3' -65.1 NC_002512.2 + 133064 0.69 0.443041
Target:  5'- gCCCCUgCagguacugcagGCgGUGGGUCCgGUUGGCGc -3'
miRNA:   3'- aGGGGA-G-----------CGgCGCCCAGGaCGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 126647 0.69 0.443041
Target:  5'- -gCCCUCGCCGCGGccGUCgacggGC-GGCGa -3'
miRNA:   3'- agGGGAGCGGCGCC--CAGga---CGaCCGC- -5'
8944 3' -65.1 NC_002512.2 + 87849 0.69 0.443041
Target:  5'- -gCCCUCGCgGCGGGUC--GCcGGCc -3'
miRNA:   3'- agGGGAGCGgCGCCCAGgaCGaCCGc -5'
8944 3' -65.1 NC_002512.2 + 99794 0.69 0.459813
Target:  5'- gCCCUUCacucgGCCGuCGGGUacuaCgaGCUGGCGg -3'
miRNA:   3'- aGGGGAG-----CGGC-GCCCA----GgaCGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 206910 0.69 0.459813
Target:  5'- gCCCgCguccCGCCGCGGGUgaugaaCgGCUGGCa -3'
miRNA:   3'- aGGG-Ga---GCGGCGCCCAg-----GaCGACCGc -5'
8944 3' -65.1 NC_002512.2 + 12597 0.68 0.468325
Target:  5'- aUCUCC-CGgCGCGcGGUCC-GCaUGGCGg -3'
miRNA:   3'- -AGGGGaGCgGCGC-CCAGGaCG-ACCGC- -5'
8944 3' -65.1 NC_002512.2 + 132450 0.68 0.468325
Target:  5'- cUCCCCg-GCgGCGGGUCCggGgaGcGCGc -3'
miRNA:   3'- -AGGGGagCGgCGCCCAGGa-CgaC-CGC- -5'
8944 3' -65.1 NC_002512.2 + 13655 0.68 0.468325
Target:  5'- aCCgUCUCGCCGCGGcUCCaGCUcccggacgaGGCGa -3'
miRNA:   3'- aGG-GGAGCGGCGCCcAGGaCGA---------CCGC- -5'
8944 3' -65.1 NC_002512.2 + 80482 0.68 0.476054
Target:  5'- gUCCCCUCGCgGCccgucgaggagccGGaGUCCUGCguccccGCGc -3'
miRNA:   3'- -AGGGGAGCGgCG-------------CC-CAGGACGac----CGC- -5'
8944 3' -65.1 NC_002512.2 + 75312 0.68 0.484716
Target:  5'- gUCgCCCUCGCCGUua-UCCUGCccccccaUGGCGa -3'
miRNA:   3'- -AG-GGGAGCGGCGcccAGGACG-------ACCGC- -5'
8944 3' -65.1 NC_002512.2 + 144712 0.68 0.485587
Target:  5'- aCCCgUCGCgCcUGGGUCa-GCUGGCGc -3'
miRNA:   3'- aGGGgAGCG-GcGCCCAGgaCGACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.