miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8944 3' -65.1 NC_002512.2 + 218283 0.66 0.641132
Target:  5'- uUCUCCUCgGCCuCgGGGUCCccgGCccugGGCGg -3'
miRNA:   3'- -AGGGGAG-CGGcG-CCCAGGa--CGa---CCGC- -5'
8944 3' -65.1 NC_002512.2 + 124060 0.66 0.641132
Target:  5'- -aCCCUCGUC-UGGGcCCUGCccgggGGCu -3'
miRNA:   3'- agGGGAGCGGcGCCCaGGACGa----CCGc -5'
8944 3' -65.1 NC_002512.2 + 82664 0.66 0.641132
Target:  5'- cUCCCUCGCUGUuuucGcGGUCCcGCUcgGGCu -3'
miRNA:   3'- aGGGGAGCGGCG----C-CCAGGaCGA--CCGc -5'
8944 3' -65.1 NC_002512.2 + 184920 0.66 0.622399
Target:  5'- cCCCUUCGCCGaggaccgguguuCGGaGUCC-GcCUGGCu -3'
miRNA:   3'- aGGGGAGCGGC------------GCC-CAGGaC-GACCGc -5'
8944 3' -65.1 NC_002512.2 + 112779 0.66 0.641132
Target:  5'- gCCCCgUGCCGCugugccGGGUCCag--GGCGg -3'
miRNA:   3'- aGGGGaGCGGCG------CCCAGGacgaCCGC- -5'
8944 3' -65.1 NC_002512.2 + 132516 0.66 0.622399
Target:  5'- gUCUCCggcCGCCGC-GGUCCccGCUccgcgGGCGg -3'
miRNA:   3'- -AGGGGa--GCGGCGcCCAGGa-CGA-----CCGC- -5'
8944 3' -65.1 NC_002512.2 + 94668 0.66 0.622399
Target:  5'- -gCCCgggGCCGgGGGgccccccggCCcGCUGGCGg -3'
miRNA:   3'- agGGGag-CGGCgCCCa--------GGaCGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 168371 0.66 0.613039
Target:  5'- cUCCUgUCGCaCGCacguggccgucaGGGUCaggUGCUGGUGc -3'
miRNA:   3'- -AGGGgAGCG-GCG------------CCCAGg--ACGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 219485 0.66 0.622399
Target:  5'- gCCCCUgGg-GCGGGUCagacgaggaUGCUGGCc -3'
miRNA:   3'- aGGGGAgCggCGCCCAGg--------ACGACCGc -5'
8944 3' -65.1 NC_002512.2 + 146927 0.67 0.56653
Target:  5'- gCgCCgugCGCCGCGa--CCUGCUGGCc -3'
miRNA:   3'- aGgGGa--GCGGCGCccaGGACGACCGc -5'
8944 3' -65.1 NC_002512.2 + 137238 0.67 0.575774
Target:  5'- gUCCCggaucCG-CGCGGGUCCcgGCgccGGCGg -3'
miRNA:   3'- aGGGGa----GCgGCGCCCAGGa-CGa--CCGC- -5'
8944 3' -65.1 NC_002512.2 + 196386 0.67 0.579482
Target:  5'- aCUUCgggaCGCCGCGGGUCUgGCgcggggacgcggggGGCGg -3'
miRNA:   3'- aGGGGa---GCGGCGCCCAGGaCGa-------------CCGC- -5'
8944 3' -65.1 NC_002512.2 + 194608 0.67 0.555487
Target:  5'- aUCCCUccgccgccgcggccgUCGCCGCGGGggaCCUGCccgUccucuucuccgaucgGGCGg -3'
miRNA:   3'- -AGGGG---------------AGCGGCGCCCa--GGACG---A---------------CCGC- -5'
8944 3' -65.1 NC_002512.2 + 184570 0.67 0.54816
Target:  5'- -gCCCUCcgacCCGCGGG-CCgGCagGGCGg -3'
miRNA:   3'- agGGGAGc---GGCGCCCaGGaCGa-CCGC- -5'
8944 3' -65.1 NC_002512.2 + 70503 0.67 0.529981
Target:  5'- gCCCCgaCGCCGCGGGaCCcGCgaaugGGaCGc -3'
miRNA:   3'- aGGGGa-GCGGCGCCCaGGaCGa----CC-GC- -5'
8944 3' -65.1 NC_002512.2 + 9210 0.67 0.539044
Target:  5'- gUCCCgUCGCCcagcacgacgcgGCGGG-CCaGgUGGCGc -3'
miRNA:   3'- -AGGGgAGCGG------------CGCCCaGGaCgACCGC- -5'
8944 3' -65.1 NC_002512.2 + 61760 0.67 0.539044
Target:  5'- gCCCCUCGCCGCGG--CCg---GGCc -3'
miRNA:   3'- aGGGGAGCGGCGCCcaGGacgaCCGc -5'
8944 3' -65.1 NC_002512.2 + 87083 0.67 0.539044
Target:  5'- uUCCUCggGUCGCGGGgcgaCgUGCUGGgGa -3'
miRNA:   3'- -AGGGGagCGGCGCCCa---GgACGACCgC- -5'
8944 3' -65.1 NC_002512.2 + 2288 0.67 0.557323
Target:  5'- cCUCCggcCGCUGCGGGUggcggggcUCUGCUgcgccGGCGg -3'
miRNA:   3'- aGGGGa--GCGGCGCCCA--------GGACGA-----CCGC- -5'
8944 3' -65.1 NC_002512.2 + 122261 0.67 0.574848
Target:  5'- uUCCCCggcgGCCGCGGGgacgUCCUGgaGcccgucaGCGa -3'
miRNA:   3'- -AGGGGag--CGGCGCCC----AGGACgaC-------CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.