miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8944 3' -65.1 NC_002512.2 + 196386 0.67 0.579482
Target:  5'- aCUUCgggaCGCCGCGGGUCUgGCgcggggacgcggggGGCGg -3'
miRNA:   3'- aGGGGa---GCGGCGCCCAGGaCGa-------------CCGC- -5'
8944 3' -65.1 NC_002512.2 + 146927 0.67 0.56653
Target:  5'- gCgCCgugCGCCGCGa--CCUGCUGGCc -3'
miRNA:   3'- aGgGGa--GCGGCGCccaGGACGACCGc -5'
8944 3' -65.1 NC_002512.2 + 70503 0.67 0.529981
Target:  5'- gCCCCgaCGCCGCGGGaCCcGCgaaugGGaCGc -3'
miRNA:   3'- aGGGGa-GCGGCGCCCaGGaCGa----CC-GC- -5'
8944 3' -65.1 NC_002512.2 + 122261 0.67 0.574848
Target:  5'- uUCCCCggcgGCCGCGGGgacgUCCUGgaGcccgucaGCGa -3'
miRNA:   3'- -AGGGGag--CGGCGCCC----AGGACgaC-------CGC- -5'
8944 3' -65.1 NC_002512.2 + 137238 0.67 0.575774
Target:  5'- gUCCCggaucCG-CGCGGGUCCcgGCgccGGCGg -3'
miRNA:   3'- aGGGGa----GCgGCGCCCAGGa-CGa--CCGC- -5'
8944 3' -65.1 NC_002512.2 + 87083 0.67 0.539044
Target:  5'- uUCCUCggGUCGCGGGgcgaCgUGCUGGgGa -3'
miRNA:   3'- -AGGGGagCGGCGCCCa---GgACGACCgC- -5'
8944 3' -65.1 NC_002512.2 + 61760 0.67 0.539044
Target:  5'- gCCCCUCGCCGCGG--CCg---GGCc -3'
miRNA:   3'- aGGGGAGCGGCGCCcaGGacgaCCGc -5'
8944 3' -65.1 NC_002512.2 + 9210 0.67 0.539044
Target:  5'- gUCCCgUCGCCcagcacgacgcgGCGGG-CCaGgUGGCGc -3'
miRNA:   3'- -AGGGgAGCGG------------CGCCCaGGaCgACCGC- -5'
8944 3' -65.1 NC_002512.2 + 46990 0.68 0.520974
Target:  5'- gCgCC-CGCCGagaGGGgccgcuUCUUGCUGGCGg -3'
miRNA:   3'- aGgGGaGCGGCg--CCC------AGGACGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 110559 0.68 0.512027
Target:  5'- gCCCC-CGCgCGgGaGGUCCUGCcgGGUc -3'
miRNA:   3'- aGGGGaGCG-GCgC-CCAGGACGa-CCGc -5'
8944 3' -65.1 NC_002512.2 + 69049 0.68 0.503145
Target:  5'- -gCCCagCGCCGCcGGccgcccgCCUGCUGGUGc -3'
miRNA:   3'- agGGGa-GCGGCGcCCa------GGACGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 12597 0.68 0.468325
Target:  5'- aUCUCC-CGgCGCGcGGUCC-GCaUGGCGg -3'
miRNA:   3'- -AGGGGaGCgGCGC-CCAGGaCG-ACCGC- -5'
8944 3' -65.1 NC_002512.2 + 65394 0.68 0.503145
Target:  5'- uUCCCCUgGgaCGUGGaGUCCUcguaGCUcGGCGg -3'
miRNA:   3'- -AGGGGAgCg-GCGCC-CAGGA----CGA-CCGC- -5'
8944 3' -65.1 NC_002512.2 + 29650 0.68 0.503145
Target:  5'- gUCCCCgUCGUCGuCGGGcUCCUcggGCUccGGCu -3'
miRNA:   3'- -AGGGG-AGCGGC-GCCC-AGGA---CGA--CCGc -5'
8944 3' -65.1 NC_002512.2 + 2562 0.68 0.503145
Target:  5'- gUCCCCUuccucgggCGCCgGCGcGUCUcccccaUGCUGGCGc -3'
miRNA:   3'- -AGGGGA--------GCGG-CGCcCAGG------ACGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 215526 0.68 0.520974
Target:  5'- aCCUCgauccCGCCcucCGGGagaUCCUGCUGGCc -3'
miRNA:   3'- aGGGGa----GCGGc--GCCC---AGGACGACCGc -5'
8944 3' -65.1 NC_002512.2 + 105334 0.68 0.512027
Target:  5'- cUCCuCCUCGCCGaCGaGGUaggaGUUGGCGu -3'
miRNA:   3'- -AGG-GGAGCGGC-GC-CCAgga-CGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 201661 0.68 0.49433
Target:  5'- gCCCCg-GCCGCGGuUCCUucuucgGCgagGGCGg -3'
miRNA:   3'- aGGGGagCGGCGCCcAGGA------CGa--CCGC- -5'
8944 3' -65.1 NC_002512.2 + 80482 0.68 0.476054
Target:  5'- gUCCCCUCGCgGCccgucgaggagccGGaGUCCUGCguccccGCGc -3'
miRNA:   3'- -AGGGGAGCGgCG-------------CC-CAGGACGac----CGC- -5'
8944 3' -65.1 NC_002512.2 + 13655 0.68 0.468325
Target:  5'- aCCgUCUCGCCGCGGcUCCaGCUcccggacgaGGCGa -3'
miRNA:   3'- aGG-GGAGCGGCGCCcAGGaCGA---------CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.