miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8944 3' -65.1 NC_002512.2 + 184207 0.67 0.529981
Target:  5'- cUCCCCggaCCGCGGGUUCUcuCUGGgGu -3'
miRNA:   3'- -AGGGGagcGGCGCCCAGGAc-GACCgC- -5'
8944 3' -65.1 NC_002512.2 + 175589 0.67 0.54816
Target:  5'- aCCaCgUCGCCguGCGGGUCCUuCgGGUGg -3'
miRNA:   3'- aGG-GgAGCGG--CGCCCAGGAcGaCCGC- -5'
8944 3' -65.1 NC_002512.2 + 174253 0.68 0.485587
Target:  5'- cUCCCUCGCC-CGGGUCCg---GGUc -3'
miRNA:   3'- aGGGGAGCGGcGCCCAGGacgaCCGc -5'
8944 3' -65.1 NC_002512.2 + 170427 0.67 0.539044
Target:  5'- gCCaCUUCuGCUGCGGGUCCcGCcgcaGGCa -3'
miRNA:   3'- aGG-GGAG-CGGCGCCCAGGaCGa---CCGc -5'
8944 3' -65.1 NC_002512.2 + 168371 0.66 0.613039
Target:  5'- cUCCUgUCGCaCGCacguggccgucaGGGUCaggUGCUGGUGc -3'
miRNA:   3'- -AGGGgAGCG-GCG------------CCCAGg--ACGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 165114 0.66 0.629892
Target:  5'- aUCUCUC-CCGCGGGgaacgucauccgCCUGUUcGGCGc -3'
miRNA:   3'- aGGGGAGcGGCGCCCa-----------GGACGA-CCGC- -5'
8944 3' -65.1 NC_002512.2 + 157351 0.66 0.622399
Target:  5'- uUCCgCCUgGCCGcCGaGGUCCggGCcgccgGGCa -3'
miRNA:   3'- -AGG-GGAgCGGC-GC-CCAGGa-CGa----CCGc -5'
8944 3' -65.1 NC_002512.2 + 155341 0.71 0.329318
Target:  5'- cUCCCgUCGCCGCGGccgCCUgGCUguaccucgucaGGCGg -3'
miRNA:   3'- -AGGGgAGCGGCGCCca-GGA-CGA-----------CCGC- -5'
8944 3' -65.1 NC_002512.2 + 153257 0.69 0.426619
Target:  5'- -aCCCgaugcgaUGCgGCGGGUCCUggucgGCUGGCu -3'
miRNA:   3'- agGGGa------GCGgCGCCCAGGA-----CGACCGc -5'
8944 3' -65.1 NC_002512.2 + 147469 0.7 0.364725
Target:  5'- gUCCCCUcCGCCGCGGGaCCaccgGCUcccccGCGc -3'
miRNA:   3'- -AGGGGA-GCGGCGCCCaGGa---CGAc----CGC- -5'
8944 3' -65.1 NC_002512.2 + 146927 0.67 0.56653
Target:  5'- gCgCCgugCGCCGCGa--CCUGCUGGCc -3'
miRNA:   3'- aGgGGa--GCGGCGCccaGGACGACCGc -5'
8944 3' -65.1 NC_002512.2 + 144712 0.68 0.485587
Target:  5'- aCCCgUCGCgCcUGGGUCa-GCUGGCGc -3'
miRNA:   3'- aGGGgAGCG-GcGCCCAGgaCGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 144601 0.7 0.387198
Target:  5'- aUCCCCUCGCa-CGaGGUCCgcgccgcGCUGGaCGu -3'
miRNA:   3'- -AGGGGAGCGgcGC-CCAGGa------CGACC-GC- -5'
8944 3' -65.1 NC_002512.2 + 137868 0.66 0.622399
Target:  5'- cUCCCCcgaCGcCCGCGaGUCCgccGCcGGCGa -3'
miRNA:   3'- -AGGGGa--GC-GGCGCcCAGGa--CGaCCGC- -5'
8944 3' -65.1 NC_002512.2 + 137238 0.67 0.575774
Target:  5'- gUCCCggaucCG-CGCGGGUCCcgGCgccGGCGg -3'
miRNA:   3'- aGGGGa----GCgGCGCCCAGGa-CGa--CCGC- -5'
8944 3' -65.1 NC_002512.2 + 135750 0.66 0.603691
Target:  5'- gCCUC-CGCCGCGucauccgcGUCCUggccgacgagagGCUGGCGg -3'
miRNA:   3'- aGGGGaGCGGCGCc-------CAGGA------------CGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 135321 0.72 0.305436
Target:  5'- gUCCCCgaggucggcgucaGCCGCgccgGGGUgCUGCUGGCc -3'
miRNA:   3'- -AGGGGag-----------CGGCG----CCCAgGACGACCGc -5'
8944 3' -65.1 NC_002512.2 + 133064 0.69 0.443041
Target:  5'- gCCCCUgCagguacugcagGCgGUGGGUCCgGUUGGCGc -3'
miRNA:   3'- aGGGGA-G-----------CGgCGCCCAGGaCGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 132516 0.66 0.622399
Target:  5'- gUCUCCggcCGCCGC-GGUCCccGCUccgcgGGCGg -3'
miRNA:   3'- -AGGGGa--GCGGCGcCCAGGa-CGA-----CCGC- -5'
8944 3' -65.1 NC_002512.2 + 132450 0.68 0.468325
Target:  5'- cUCCCCg-GCgGCGGGUCCggGgaGcGCGc -3'
miRNA:   3'- -AGGGGagCGgCGCCCAGGa-CgaC-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.