miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8944 3' -65.1 NC_002512.2 + 226498 1.08 0.000842
Target:  5'- cUCCCCUCGCCGCGGGUCCUGCUGGCGg -3'
miRNA:   3'- -AGGGGAGCGGCGCCCAGGACGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 220002 0.73 0.272141
Target:  5'- cCCCCUCGCCcgGCGGGUCgaGa-GGCc -3'
miRNA:   3'- aGGGGAGCGG--CGCCCAGgaCgaCCGc -5'
8944 3' -65.1 NC_002512.2 + 219485 0.66 0.622399
Target:  5'- gCCCCUgGg-GCGGGUCagacgaggaUGCUGGCc -3'
miRNA:   3'- aGGGGAgCggCGCCCAGg--------ACGACCGc -5'
8944 3' -65.1 NC_002512.2 + 219353 0.67 0.5336
Target:  5'- gCCCggCGuCCGCGaGGUCCUGCgccucugcucccugGGCu -3'
miRNA:   3'- aGGGgaGC-GGCGC-CCAGGACGa-------------CCGc -5'
8944 3' -65.1 NC_002512.2 + 218283 0.66 0.641132
Target:  5'- uUCUCCUCgGCCuCgGGGUCCccgGCccugGGCGg -3'
miRNA:   3'- -AGGGGAG-CGGcG-CCCAGGa--CGa---CCGC- -5'
8944 3' -65.1 NC_002512.2 + 217773 0.79 0.100822
Target:  5'- gUCCCCgUCGCCG-GGGUCgCggccgGCUGGCGg -3'
miRNA:   3'- -AGGGG-AGCGGCgCCCAG-Ga----CGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 217701 0.66 0.59436
Target:  5'- uUCCCCgccggCGUCGaCGaGGUCC-GCUucaggGGCGg -3'
miRNA:   3'- -AGGGGa----GCGGC-GC-CCAGGaCGA-----CCGC- -5'
8944 3' -65.1 NC_002512.2 + 215637 0.71 0.329318
Target:  5'- gCUCUUCGCCGUGGGg-CUGCgGGCc -3'
miRNA:   3'- aGGGGAGCGGCGCCCagGACGaCCGc -5'
8944 3' -65.1 NC_002512.2 + 215526 0.68 0.520974
Target:  5'- aCCUCgauccCGCCcucCGGGagaUCCUGCUGGCc -3'
miRNA:   3'- aGGGGa----GCGGc--GCCC---AGGACGACCGc -5'
8944 3' -65.1 NC_002512.2 + 206910 0.69 0.459813
Target:  5'- gCCCgCguccCGCCGCGGGUgaugaaCgGCUGGCa -3'
miRNA:   3'- aGGG-Ga---GCGGCGCCCAg-----GaCGACCGc -5'
8944 3' -65.1 NC_002512.2 + 204975 0.66 0.603691
Target:  5'- gCCCgaCGCCGCGGGcgacggggaCCggaagGCgggGGCGa -3'
miRNA:   3'- aGGGgaGCGGCGCCCa--------GGa----CGa--CCGC- -5'
8944 3' -65.1 NC_002512.2 + 201661 0.68 0.49433
Target:  5'- gCCCCg-GCCGCGGuUCCUucuucgGCgagGGCGg -3'
miRNA:   3'- aGGGGagCGGCGCCcAGGA------CGa--CCGC- -5'
8944 3' -65.1 NC_002512.2 + 198100 0.7 0.393342
Target:  5'- cUCCCCgUCGCCGaguaGGGUUUggcccccuugagGUUGGCGa -3'
miRNA:   3'- -AGGGG-AGCGGCg---CCCAGGa-----------CGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 196386 0.67 0.579482
Target:  5'- aCUUCgggaCGCCGCGGGUCUgGCgcggggacgcggggGGCGg -3'
miRNA:   3'- aGGGGa---GCGGCGCCCAGGaCGa-------------CCGC- -5'
8944 3' -65.1 NC_002512.2 + 194608 0.67 0.555487
Target:  5'- aUCCCUccgccgccgcggccgUCGCCGCGGGggaCCUGCccgUccucuucuccgaucgGGCGg -3'
miRNA:   3'- -AGGGG---------------AGCGGCGCCCa--GGACG---A---------------CCGC- -5'
8944 3' -65.1 NC_002512.2 + 192174 0.67 0.539044
Target:  5'- -gCCCUCGCUGUccGUCCUGCgccGCGg -3'
miRNA:   3'- agGGGAGCGGCGccCAGGACGac-CGC- -5'
8944 3' -65.1 NC_002512.2 + 189525 0.71 0.357437
Target:  5'- gCCCgggCUCGCCGCGGucggcGUCCgcggcaucUGCUGGUGc -3'
miRNA:   3'- aGGG---GAGCGGCGCC-----CAGG--------ACGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 185466 0.73 0.266305
Target:  5'- cUCCUUCGCCGU-GGUCCUGCcgccgcaggucaUGGCGc -3'
miRNA:   3'- aGGGGAGCGGCGcCCAGGACG------------ACCGC- -5'
8944 3' -65.1 NC_002512.2 + 184920 0.66 0.622399
Target:  5'- cCCCUUCGCCGaggaccgguguuCGGaGUCC-GcCUGGCu -3'
miRNA:   3'- aGGGGAGCGGC------------GCC-CAGGaC-GACCGc -5'
8944 3' -65.1 NC_002512.2 + 184570 0.67 0.54816
Target:  5'- -gCCCUCcgacCCGCGGG-CCgGCagGGCGg -3'
miRNA:   3'- agGGGAGc---GGCGCCCaGGaCGa-CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.