miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8945 3' -57.1 NC_002512.2 + 121592 0.67 0.908496
Target:  5'- -aGUCgaUCUCCGACGCcugcGACUUCUucaggcagcccgGCGAa -3'
miRNA:   3'- agCAG--AGAGGCUGCG----CUGAGGA------------CGCU- -5'
8945 3' -57.1 NC_002512.2 + 127057 0.66 0.952052
Target:  5'- cCGUCUCcucgCgGACGUGcguCUUCUGCGc -3'
miRNA:   3'- aGCAGAGa---GgCUGCGCu--GAGGACGCu -5'
8945 3' -57.1 NC_002512.2 + 127259 0.66 0.939483
Target:  5'- -gGUCcugCUCCGGgugcugUGCGACUCCacggacgGCGAg -3'
miRNA:   3'- agCAGa--GAGGCU------GCGCUGAGGa------CGCU- -5'
8945 3' -57.1 NC_002512.2 + 132514 0.67 0.896436
Target:  5'- cCGUCUCcggCCGcCGCGguccccGCUCCgcggGCGGc -3'
miRNA:   3'- aGCAGAGa--GGCuGCGC------UGAGGa---CGCU- -5'
8945 3' -57.1 NC_002512.2 + 133361 0.71 0.736203
Target:  5'- cCGgCUCacaccgCCGGCGCGGCUCCcuccgGCGGu -3'
miRNA:   3'- aGCaGAGa-----GGCUGCGCUGAGGa----CGCU- -5'
8945 3' -57.1 NC_002512.2 + 141713 0.66 0.939483
Target:  5'- cUCGUC-C-CgGACGCGACcgUCCcggGCGAc -3'
miRNA:   3'- -AGCAGaGaGgCUGCGCUG--AGGa--CGCU- -5'
8945 3' -57.1 NC_002512.2 + 143228 0.68 0.862671
Target:  5'- cCGUCcgCUCgGACGCGGCcaCC-GCGAu -3'
miRNA:   3'- aGCAGa-GAGgCUGCGCUGa-GGaCGCU- -5'
8945 3' -57.1 NC_002512.2 + 147983 0.66 0.937661
Target:  5'- -gGUCUaUCCGACGUuucuuGACUCCgggagggaaaacgGCGAg -3'
miRNA:   3'- agCAGAgAGGCUGCG-----CUGAGGa------------CGCU- -5'
8945 3' -57.1 NC_002512.2 + 152280 0.67 0.914204
Target:  5'- cUCGUCgUUCCGGCgGCGA-UCC-GCGAg -3'
miRNA:   3'- -AGCAGaGAGGCUG-CGCUgAGGaCGCU- -5'
8945 3' -57.1 NC_002512.2 + 153613 0.7 0.807625
Target:  5'- cCGUCUCgUCCGuCGUGACuaaUCCUucgGCGGa -3'
miRNA:   3'- aGCAGAG-AGGCuGCGCUG---AGGA---CGCU- -5'
8945 3' -57.1 NC_002512.2 + 154685 0.66 0.939483
Target:  5'- cCGUCcgCUCCGA-GCGGCcgUCCgGCGu -3'
miRNA:   3'- aGCAGa-GAGGCUgCGCUG--AGGaCGCu -5'
8945 3' -57.1 NC_002512.2 + 155563 0.69 0.838539
Target:  5'- aCGUCggacuaugggacCUCUGACGCGGuCUCgCUGCGu -3'
miRNA:   3'- aGCAGa-----------GAGGCUGCGCU-GAG-GACGCu -5'
8945 3' -57.1 NC_002512.2 + 158318 0.67 0.919696
Target:  5'- -gGUCg-UCCGGCGCGAgUCC-GCGc -3'
miRNA:   3'- agCAGagAGGCUGCGCUgAGGaCGCu -5'
8945 3' -57.1 NC_002512.2 + 158804 0.68 0.883536
Target:  5'- gUCGUCgacuUCUCgGcCGCGAa-CCUGCGGg -3'
miRNA:   3'- -AGCAG----AGAGgCuGCGCUgaGGACGCU- -5'
8945 3' -57.1 NC_002512.2 + 168952 0.74 0.591155
Target:  5'- cUCG-CUCUCCGACGCGaagcGCUUC-GCGGu -3'
miRNA:   3'- -AGCaGAGAGGCUGCGC----UGAGGaCGCU- -5'
8945 3' -57.1 NC_002512.2 + 171799 0.7 0.807625
Target:  5'- cUCGUCccgaCGGCGCGcGCUCCUGCu- -3'
miRNA:   3'- -AGCAGagagGCUGCGC-UGAGGACGcu -5'
8945 3' -57.1 NC_002512.2 + 172685 0.69 0.81598
Target:  5'- cUCGUCUCcgUCCuGCGCGACcgcugCC-GCGAg -3'
miRNA:   3'- -AGCAGAG--AGGcUGCGCUGa----GGaCGCU- -5'
8945 3' -57.1 NC_002512.2 + 175824 0.72 0.669233
Target:  5'- cCG-CUCgUCCGugGCGcCUCCUGCc- -3'
miRNA:   3'- aGCaGAG-AGGCugCGCuGAGGACGcu -5'
8945 3' -57.1 NC_002512.2 + 188774 0.66 0.952052
Target:  5'- gCGg--UUCCGGCgGCGGCUCCggccucgGCGGc -3'
miRNA:   3'- aGCagaGAGGCUG-CGCUGAGGa------CGCU- -5'
8945 3' -57.1 NC_002512.2 + 189174 0.66 0.939483
Target:  5'- gCGUCUCaguUCCGACGCGuCaaagaUCUGCa- -3'
miRNA:   3'- aGCAGAG---AGGCUGCGCuGa----GGACGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.