miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8945 3' -57.1 NC_002512.2 + 107338 0.69 0.847805
Target:  5'- aCGUC-CUCCGuCGCGGCgagCCUGa-- -3'
miRNA:   3'- aGCAGaGAGGCuGCGCUGa--GGACgcu -5'
8945 3' -57.1 NC_002512.2 + 108478 0.67 0.896436
Target:  5'- gCGUCUCccuccacgCCaGGCGCGGCUCCguccgGCc- -3'
miRNA:   3'- aGCAGAGa-------GG-CUGCGCUGAGGa----CGcu -5'
8945 3' -57.1 NC_002512.2 + 91297 0.67 0.902572
Target:  5'- gCGUCUCcCCGGcCGCGAUccgcagcguggUCUGCGAc -3'
miRNA:   3'- aGCAGAGaGGCU-GCGCUGa----------GGACGCU- -5'
8945 3' -57.1 NC_002512.2 + 217635 0.66 0.939483
Target:  5'- -gGUCUCgugCUGAUGCGGauggCCUGCu- -3'
miRNA:   3'- agCAGAGa--GGCUGCGCUga--GGACGcu -5'
8945 3' -57.1 NC_002512.2 + 218821 0.66 0.934863
Target:  5'- cCGUCUCgcCCucCGCGGC-CCUGCu- -3'
miRNA:   3'- aGCAGAGa-GGcuGCGCUGaGGACGcu -5'
8945 3' -57.1 NC_002512.2 + 222245 0.66 0.934863
Target:  5'- uUCGUCg--CCGugGCGGgUCUcGUGAu -3'
miRNA:   3'- -AGCAGagaGGCugCGCUgAGGaCGCU- -5'
8945 3' -57.1 NC_002512.2 + 194647 0.66 0.930025
Target:  5'- cCGUCcucuUCUCCGAUcggGCGG-UCCUGCa- -3'
miRNA:   3'- aGCAG----AGAGGCUG---CGCUgAGGACGcu -5'
8945 3' -57.1 NC_002512.2 + 207537 0.67 0.919696
Target:  5'- gCGUC-CUCCcGCuGCGACUCCUcccucGCGu -3'
miRNA:   3'- aGCAGaGAGGcUG-CGCUGAGGA-----CGCu -5'
8945 3' -57.1 NC_002512.2 + 201639 0.67 0.919696
Target:  5'- cCGUCguaCUCgCGGCGCGACggccCCggccGCGGu -3'
miRNA:   3'- aGCAGa--GAG-GCUGCGCUGa---GGa---CGCU- -5'
8945 3' -57.1 NC_002512.2 + 158318 0.67 0.919696
Target:  5'- -gGUCg-UCCGGCGCGAgUCC-GCGc -3'
miRNA:   3'- agCAGagAGGCUGCGCUgAGGaCGCu -5'
8945 3' -57.1 NC_002512.2 + 141713 0.66 0.939483
Target:  5'- cUCGUC-C-CgGACGCGACcgUCCcggGCGAc -3'
miRNA:   3'- -AGCAGaGaGgCUGCGCUG--AGGa--CGCU- -5'
8945 3' -57.1 NC_002512.2 + 154685 0.66 0.939483
Target:  5'- cCGUCcgCUCCGA-GCGGCcgUCCgGCGu -3'
miRNA:   3'- aGCAGa-GAGGCUgCGCUG--AGGaCGCu -5'
8945 3' -57.1 NC_002512.2 + 215464 0.66 0.943887
Target:  5'- -gGUCaUCgCCGGCGuCGACUCCUccugGCGc -3'
miRNA:   3'- agCAG-AGaGGCUGC-GCUGAGGA----CGCu -5'
8945 3' -57.1 NC_002512.2 + 201817 0.66 0.943887
Target:  5'- cCGUCUCcgCCG-CGCccgggGGCUCCUuccGCGGc -3'
miRNA:   3'- aGCAGAGa-GGCuGCG-----CUGAGGA---CGCU- -5'
8945 3' -57.1 NC_002512.2 + 218399 0.66 0.948076
Target:  5'- gUCGUcCUCUCCGuCGuCGuCgUCCUcGCGGu -3'
miRNA:   3'- -AGCA-GAGAGGCuGC-GCuG-AGGA-CGCU- -5'
8945 3' -57.1 NC_002512.2 + 108168 0.66 0.948076
Target:  5'- gCGUCg--CCGGCGC--CUUCUGCGGc -3'
miRNA:   3'- aGCAGagaGGCUGCGcuGAGGACGCU- -5'
8945 3' -57.1 NC_002512.2 + 78277 0.66 0.950487
Target:  5'- aCGUUguUCUCCGACGCGcggaccgugucguCUCguuuccgcgaCUGCGAg -3'
miRNA:   3'- aGCAG--AGAGGCUGCGCu------------GAG----------GACGCU- -5'
8945 3' -57.1 NC_002512.2 + 77968 0.66 0.950881
Target:  5'- uUCGUCUCggggaCCGACGaCGGCaugCCUaccggaaacgauccGCGGa -3'
miRNA:   3'- -AGCAGAGa----GGCUGC-GCUGa--GGA--------------CGCU- -5'
8945 3' -57.1 NC_002512.2 + 56676 0.66 0.951664
Target:  5'- --cUCUCUCCGGCaagauggGCGAUUCCggUGCa- -3'
miRNA:   3'- agcAGAGAGGCUG-------CGCUGAGG--ACGcu -5'
8945 3' -57.1 NC_002512.2 + 225869 1.09 0.00427
Target:  5'- gUCGUCUCUCCGACGCGACUCCUGCGAc -3'
miRNA:   3'- -AGCAGAGAGGCUGCGCUGAGGACGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.