miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8947 5' -56.2 NC_002512.2 + 186245 0.74 0.617487
Target:  5'- cGAGGUCCCGGuccuCGGUcacGAGGUCu- -3'
miRNA:   3'- uCUCCAGGGCUu---GCCGaa-CUCCAGcu -5'
8947 5' -56.2 NC_002512.2 + 199 0.69 0.84001
Target:  5'- aAGGGG-CCCGGGCGGa--GAGGgagCGGg -3'
miRNA:   3'- -UCUCCaGGGCUUGCCgaaCUCCa--GCU- -5'
8947 5' -56.2 NC_002512.2 + 204805 0.67 0.935654
Target:  5'- gGGAGGUCCgCGucccgggggcgcGGCGGCUccguccggGAGGaCGAc -3'
miRNA:   3'- -UCUCCAGG-GC------------UUGCCGAa-------CUCCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 225513 0.72 0.722375
Target:  5'- cGGGGGUCCCGGgcuucgcggacgggACGGCgggagcgcgGAGGaCGAc -3'
miRNA:   3'- -UCUCCAGGGCU--------------UGCCGaa-------CUCCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 223923 0.79 0.348722
Target:  5'- gAGAGGUCgagCCGGACGGg--GAGGUCGAu -3'
miRNA:   3'- -UCUCCAG---GGCUUGCCgaaCUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 96190 0.72 0.686542
Target:  5'- cGGuGGUCCgGGagGCGGCcgcGAGGUCGGc -3'
miRNA:   3'- -UCuCCAGGgCU--UGCCGaa-CUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 188923 0.67 0.940291
Target:  5'- cGGAGaGUCCCGGuggcGgGGCgcgGcGGUCGGu -3'
miRNA:   3'- -UCUC-CAGGGCU----UgCCGaa-CuCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 223752 0.66 0.944707
Target:  5'- uGGAGGUCguguCCGAcgACaGC--GAGGUCGAg -3'
miRNA:   3'- -UCUCCAG----GGCU--UGcCGaaCUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 108449 0.67 0.930794
Target:  5'- gGGGGGUcccucCCCGGGCGGCgccGGGUUc- -3'
miRNA:   3'- -UCUCCA-----GGGCUUGCCGaacUCCAGcu -5'
8947 5' -56.2 NC_002512.2 + 102491 0.7 0.832036
Target:  5'- uGGcGGUCCCGcaGGCGGCggacgggGAGGaCGAg -3'
miRNA:   3'- -UCuCCAGGGC--UUGCCGaa-----CUCCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 123394 0.71 0.780877
Target:  5'- cGGGGaguucuUCUCGGACGGCgaGGcGGUCGAg -3'
miRNA:   3'- uCUCC------AGGGCUUGCCGaaCU-CCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 81243 0.66 0.952883
Target:  5'- cGGaAGGagUCCG-GCGGCcugcggUUGAGGUCGAc -3'
miRNA:   3'- -UC-UCCa-GGGCuUGCCG------AACUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 4444 0.68 0.890554
Target:  5'- cGGGGUgCCGGGCGcg--GGGGUCGGc -3'
miRNA:   3'- uCUCCAgGGCUUGCcgaaCUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 25908 0.69 0.855421
Target:  5'- --cGGUCCgGAucCGGUccaUGAGGUCGAu -3'
miRNA:   3'- ucuCCAGGgCUu-GCCGa--ACUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 87260 0.7 0.832036
Target:  5'- gAGGGGUCuCCGGggagcgaacacGCGGUcgUGGGGUgGAc -3'
miRNA:   3'- -UCUCCAG-GGCU-----------UGCCGa-ACUCCAgCU- -5'
8947 5' -56.2 NC_002512.2 + 57613 0.67 0.940291
Target:  5'- cAGAuGUCCCGGGCgaccgagcgGGCgUGAGG-CGAg -3'
miRNA:   3'- -UCUcCAGGGCUUG---------CCGaACUCCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 84169 0.67 0.940291
Target:  5'- gGGAGGUCCCGGuccagguuCGGCggGAccaGG-CGGc -3'
miRNA:   3'- -UCUCCAGGGCUu-------GCCGaaCU---CCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 45102 0.66 0.944707
Target:  5'- cGGAGG-CCCGGGCcacgucCUcGGGGUCGAc -3'
miRNA:   3'- -UCUCCaGGGCUUGcc----GAaCUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 82418 0.66 0.948904
Target:  5'- cGGuGGUCCC--GCGGCggaGGGGaCGAg -3'
miRNA:   3'- -UCuCCAGGGcuUGCCGaa-CUCCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 47812 0.66 0.948904
Target:  5'- cAGAc--CCCGGagccGCGGC-UGAGGUCGGc -3'
miRNA:   3'- -UCUccaGGGCU----UGCCGaACUCCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.