miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8947 5' -56.2 NC_002512.2 + 195010 0.66 0.963552
Target:  5'- cGGcGGUCCCGGcgGCGGCgacGAcGG-CGAc -3'
miRNA:   3'- -UCuCCAGGGCU--UGCCGaa-CU-CCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 229602 0.69 0.84001
Target:  5'- aAGGGG-CCCGGGCGGa--GAGGgagCGGg -3'
miRNA:   3'- -UCUCCaGGGCUUGCCgaaCUCCa--GCU- -5'
8947 5' -56.2 NC_002512.2 + 199 0.69 0.84001
Target:  5'- aAGGGG-CCCGGGCGGa--GAGGgagCGGg -3'
miRNA:   3'- -UCUCCaGGGCUUGCCgaaCUCCa--GCU- -5'
8947 5' -56.2 NC_002512.2 + 221221 1.09 0.004791
Target:  5'- gAGAGGUCCCGAACGGCUUGAGGUCGAu -3'
miRNA:   3'- -UCUCCAGGGCUUGCCGAACUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 188923 0.67 0.940291
Target:  5'- cGGAGaGUCCCGGuggcGgGGCgcgGcGGUCGGu -3'
miRNA:   3'- -UCUC-CAGGGCU----UgCCGaa-CuCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 204805 0.67 0.935654
Target:  5'- gGGAGGUCCgCGucccgggggcgcGGCGGCUccguccggGAGGaCGAc -3'
miRNA:   3'- -UCUCCAGG-GC------------UUGCCGAa-------CUCCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 108449 0.67 0.930794
Target:  5'- gGGGGGUcccucCCCGGGCGGCgccGGGUUc- -3'
miRNA:   3'- -UCUCCA-----GGGCUUGCCGaacUCCAGcu -5'
8947 5' -56.2 NC_002512.2 + 59488 0.67 0.925711
Target:  5'- -cGGGUCUCGAGCGGCcUGGaugcuGGaCGAa -3'
miRNA:   3'- ucUCCAGGGCUUGCCGaACU-----CCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 153273 0.68 0.909123
Target:  5'- -cGGGUCCUGGuCGGCUggcuccgcuGGGUCGGu -3'
miRNA:   3'- ucUCCAGGGCUuGCCGAac-------UCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 211780 0.69 0.847807
Target:  5'- uGGAGG-CCCGggUGGCcgcgGGGGcCGu -3'
miRNA:   3'- -UCUCCaGGGCuuGCCGaa--CUCCaGCu -5'
8947 5' -56.2 NC_002512.2 + 163001 0.69 0.877109
Target:  5'- cGGAuGGcguUCCuCGAGCGGCccGAGGUCa- -3'
miRNA:   3'- -UCU-CC---AGG-GCUUGCCGaaCUCCAGcu -5'
8947 5' -56.2 NC_002512.2 + 114266 0.67 0.912601
Target:  5'- cGAGGcgagaaUCCuCGAACGGCgcgaucucucgagUGAGGUUGu -3'
miRNA:   3'- uCUCC------AGG-GCUUGCCGa------------ACUCCAGCu -5'
8947 5' -56.2 NC_002512.2 + 103600 0.66 0.958095
Target:  5'- cGAGGgcggugucgacggccUCCCGGuACcGCUgGAGGUCGGc -3'
miRNA:   3'- uCUCC---------------AGGGCU-UGcCGAaCUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 221602 0.69 0.862847
Target:  5'- gGGGGGUCggUGGACGGCgagGAGGgagCGGg -3'
miRNA:   3'- -UCUCCAGg-GCUUGCCGaa-CUCCa--GCU- -5'
8947 5' -56.2 NC_002512.2 + 212401 0.66 0.948904
Target:  5'- aGGAGGcggCCGAcgaggacgACgGGCggGAGGUCGAg -3'
miRNA:   3'- -UCUCCag-GGCU--------UG-CCGaaCUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 113717 0.67 0.914875
Target:  5'- -uGGGUCCCGAcgcggGCGGCgaucUGcGGGcCGAg -3'
miRNA:   3'- ucUCCAGGGCU-----UGCCGa---AC-UCCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 168124 0.69 0.855421
Target:  5'- gAGAGGggCCCGGccGCGGCgaggggcugGGGGUgGGg -3'
miRNA:   3'- -UCUCCa-GGGCU--UGCCGaa-------CUCCAgCU- -5'
8947 5' -56.2 NC_002512.2 + 220208 0.69 0.84001
Target:  5'- cGGGG-CCCGAcgGCGGCccgGGGGaCGAg -3'
miRNA:   3'- uCUCCaGGGCU--UGCCGaa-CUCCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 223752 0.66 0.944707
Target:  5'- uGGAGGUCguguCCGAcgACaGC--GAGGUCGAg -3'
miRNA:   3'- -UCUCCAG----GGCU--UGcCGaaCUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 204888 0.67 0.935654
Target:  5'- cGAGcUCUCGGACGGCgagcgGuccuGGUCGGg -3'
miRNA:   3'- uCUCcAGGGCUUGCCGaa---Cu---CCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.