Results 21 - 40 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8948 | 5' | -63.9 | NC_002512.2 | + | 57170 | 0.72 | 0.345543 |
Target: 5'- -aCAGCGGGuUGCCGCagggcaccucgCGGCAGCGGu -3' miRNA: 3'- ugGUUGCCCcACGGCGg----------GCCGUCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 133795 | 0.72 | 0.345543 |
Target: 5'- -gCGGCGGGGacgacgGUCGCgCCGGguGCGGg -3' miRNA: 3'- ugGUUGCCCCa-----CGGCG-GGCCguCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 126360 | 0.72 | 0.33845 |
Target: 5'- gGCCGGCGGcaacuuccugcuGGUcaccaacgcGCUGCCCGGCgAGCGGu -3' miRNA: 3'- -UGGUUGCC------------CCA---------CGGCGGGCCG-UCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 120783 | 0.72 | 0.345543 |
Target: 5'- gGCCGucgGCGGGG-GCgGCgggaCGGCGGCGGu -3' miRNA: 3'- -UGGU---UGCCCCaCGgCGg---GCCGUCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 10364 | 0.72 | 0.330771 |
Target: 5'- cGCCGACgaagacgGGGGUGCCGaacgCCGGcCAGCa- -3' miRNA: 3'- -UGGUUG-------CCCCACGGCg---GGCC-GUCGcu -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 130132 | 0.72 | 0.317811 |
Target: 5'- gGCC--CGGGGUggugucgcgGCCgcgggGCCCGGCGGCGGg -3' miRNA: 3'- -UGGuuGCCCCA---------CGG-----CGGGCCGUCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 90496 | 0.71 | 0.382586 |
Target: 5'- cUCGACGGGaucgggGCCGaggCCGGCGGCGGa -3' miRNA: 3'- uGGUUGCCCca----CGGCg--GGCCGUCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 170816 | 0.71 | 0.374969 |
Target: 5'- -gCGACGGGG-GCgGCagcggCGGCAGCGGc -3' miRNA: 3'- ugGUUGCCCCaCGgCGg----GCCGUCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 33195 | 0.71 | 0.390305 |
Target: 5'- gGCUGGCGGacGGUGCCGCucgucccgCCGGCAGUcaGAg -3' miRNA: 3'- -UGGUUGCC--CCACGGCG--------GGCCGUCG--CU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 213354 | 0.71 | 0.390305 |
Target: 5'- aGCCAG-GGGGacGcCCGCgCUGGCGGCGAc -3' miRNA: 3'- -UGGUUgCCCCa-C-GGCG-GGCCGUCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 204725 | 0.71 | 0.390305 |
Target: 5'- gGCCcggGGCGGGGgGCCGgaCCCGGguGCu- -3' miRNA: 3'- -UGG---UUGCCCCaCGGC--GGGCCguCGcu -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 96513 | 0.71 | 0.382586 |
Target: 5'- gACCGcCGGaGGgaGCCGCgCCGGCGGUGu -3' miRNA: 3'- -UGGUuGCC-CCa-CGGCG-GGCCGUCGCu -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 106630 | 0.71 | 0.398124 |
Target: 5'- cGCCGG-GGGGUaGCgGCgCCGGCucGGCGAg -3' miRNA: 3'- -UGGUUgCCCCA-CGgCG-GGCCG--UCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 132092 | 0.71 | 0.352742 |
Target: 5'- aGCCGGagcgcucggacCGGGGcucgaggGCCGCCCGGUAggccGCGAg -3' miRNA: 3'- -UGGUU-----------GCCCCa------CGGCGGGCCGU----CGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 96753 | 0.71 | 0.367455 |
Target: 5'- aGCgAGCGGGGccCCGUCCGaGCGGCGc -3' miRNA: 3'- -UGgUUGCCCCacGGCGGGC-CGUCGCu -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 153964 | 0.71 | 0.374969 |
Target: 5'- uUCuuCGGGGUccgGCgGCgCCGGCGGCGGc -3' miRNA: 3'- uGGuuGCCCCA---CGgCG-GGCCGUCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 4855 | 0.71 | 0.360046 |
Target: 5'- gGCCAucGCGGGGUucGCCGCgugcggcgCCGGCuggaggagcGGCGAc -3' miRNA: 3'- -UGGU--UGCCCCA--CGGCG--------GGCCG---------UCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 95953 | 0.71 | 0.36671 |
Target: 5'- uCCGGCGGGGgGCUgagGCCCGgguuggcGCAGCGGc -3' miRNA: 3'- uGGUUGCCCCaCGG---CGGGC-------CGUCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 105005 | 0.71 | 0.367455 |
Target: 5'- cGCCGugACGGGGccGCCGCCCGGUucuCGu -3' miRNA: 3'- -UGGU--UGCCCCa-CGGCGGGCCGuc-GCu -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 29568 | 0.71 | 0.398124 |
Target: 5'- cGCCGGCGGGaaGCCGCUCcccgagGGCGGaCGAg -3' miRNA: 3'- -UGGUUGCCCcaCGGCGGG------CCGUC-GCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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