miRNA display CGI


Results 61 - 80 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 29094 0.71 0.380745
Target:  5'- cCGCCUcgucuuCgGCGGCGGcGGCCauGGCGAUg -3'
miRNA:   3'- uGCGGAu-----GgCGCCGCC-CCGG--CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 29732 0.75 0.218666
Target:  5'- uCGcCCUACCGUGGCggcgcgcgagGGGGCCcGGCGAUc -3'
miRNA:   3'- uGC-GGAUGGCGCCG----------CCCCGG-CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 30662 0.7 0.411846
Target:  5'- uGCGCCggaucUACCggGCGGCGcGGUCGgACGACa -3'
miRNA:   3'- -UGCGG-----AUGG--CGCCGCcCCGGC-UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 32566 0.68 0.53178
Target:  5'- cCGCCgggcGCCGCGGgugcCGGGGUCGuguCGGa -3'
miRNA:   3'- uGCGGa---UGGCGCC----GCCCCGGCu--GCUg -5'
8949 3' -64.4 NC_002512.2 + 33498 0.7 0.437004
Target:  5'- cGCGCCagacCCGCGGCGucccgaagugagcccGGCCGGCGGa -3'
miRNA:   3'- -UGCGGau--GGCGCCGCc--------------CCGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 34910 0.71 0.368011
Target:  5'- uGCGCCgagaggaggacgagaCGaCGGCGGGGUCGcgGCGACg -3'
miRNA:   3'- -UGCGGaug------------GC-GCCGCCCCGGC--UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 35273 0.69 0.469868
Target:  5'- cGCGgCgacgGCCGCGGCGGcGGa-GGCGAUc -3'
miRNA:   3'- -UGCgGa---UGGCGCCGCC-CCggCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 36981 0.66 0.633905
Target:  5'- gGCGgCUcuggACCGCcGCGGaGCgCGACGGCg -3'
miRNA:   3'- -UGCgGA----UGGCGcCGCCcCG-GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 38930 0.73 0.266916
Target:  5'- -gGCC-GCCGCGGCGGGcGCCcGCGuGCg -3'
miRNA:   3'- ugCGGaUGGCGCCGCCC-CGGcUGC-UG- -5'
8949 3' -64.4 NC_002512.2 + 39690 0.73 0.281159
Target:  5'- cGCGCCgccgaccuucugcaGCCGgGGCGagcggaucGGGUCGACGACg -3'
miRNA:   3'- -UGCGGa-------------UGGCgCCGC--------CCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 40361 0.7 0.396099
Target:  5'- gACGCCgACCGCGGCGagcccGGGCCcggaGCGuCu -3'
miRNA:   3'- -UGCGGaUGGCGCCGC-----CCCGGc---UGCuG- -5'
8949 3' -64.4 NC_002512.2 + 41088 0.69 0.461319
Target:  5'- -aGCC-GCCGCGauCGGGGCCGcCGAg -3'
miRNA:   3'- ugCGGaUGGCGCc-GCCCCGGCuGCUg -5'
8949 3' -64.4 NC_002512.2 + 42578 0.73 0.266916
Target:  5'- gGCGCCgcgagGCgaGCGGCGGGGCgGACc-- -3'
miRNA:   3'- -UGCGGa----UGg-CGCCGCCCCGgCUGcug -5'
8949 3' -64.4 NC_002512.2 + 44406 0.68 0.504836
Target:  5'- uGCGCCaugACCuGCGGCGGcaGGaccaCGGCGAa -3'
miRNA:   3'- -UGCGGa--UGG-CGCCGCC--CCg---GCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 44480 0.66 0.671398
Target:  5'- gGCGCCccgggGCCG-GGCGGaGaaGACGGCc -3'
miRNA:   3'- -UGCGGa----UGGCgCCGCCcCggCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 45106 0.66 0.662048
Target:  5'- -gGCCcggGCCaCGuccuCGGGGUCGACGACc -3'
miRNA:   3'- ugCGGa--UGGcGCc---GCCCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 45257 0.67 0.568465
Target:  5'- uCGCCgucgGCCGcCGGCGGGGCgcuCGcGCu -3'
miRNA:   3'- uGCGGa---UGGC-GCCGCCCCGgcuGC-UG- -5'
8949 3' -64.4 NC_002512.2 + 45430 0.76 0.186896
Target:  5'- gGCGCCgGCCGCGGCGacucccuguccgacGCCGGCGGCg -3'
miRNA:   3'- -UGCGGaUGGCGCCGCcc------------CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 45511 0.79 0.113722
Target:  5'- cACGCCgaaagcgcCCGCGGCGGGcGgCGGCGGCg -3'
miRNA:   3'- -UGCGGau------GGCGCCGCCC-CgGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 46989 0.67 0.59639
Target:  5'- cGCGCCcGCCGaga-GGGGCCGcuucuugcugGCGGCg -3'
miRNA:   3'- -UGCGGaUGGCgccgCCCCGGC----------UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.