miRNA display CGI


Results 61 - 80 of 401 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 116963 0.74 0.232304
Target:  5'- cGCGCCaccggGCCGCcgacgccccguccgGGC-GGGCCGACGGCc -3'
miRNA:   3'- -UGCGGa----UGGCG--------------CCGcCCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 3069 0.74 0.244481
Target:  5'- gACGCg-GCgGCGGCGGcGGCCacGGCGGCg -3'
miRNA:   3'- -UGCGgaUGgCGCCGCC-CCGG--CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 39690 0.73 0.281159
Target:  5'- cGCGCCgccgaccuucugcaGCCGgGGCGagcggaucGGGUCGACGACg -3'
miRNA:   3'- -UGCGGa-------------UGGCgCCGC--------CCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 136177 0.73 0.284813
Target:  5'- cCGCCg--CGCGGCGGGGUCGcCGGg -3'
miRNA:   3'- uGCGGaugGCGCCGCCCCGGCuGCUg -5'
8949 3' -64.4 NC_002512.2 + 88972 0.72 0.303645
Target:  5'- uGCGUCUGggucuccggcuUCGUGGCcggGGGGCCGACGGa -3'
miRNA:   3'- -UGCGGAU-----------GGCGCCG---CCCCGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 121826 0.72 0.308174
Target:  5'- uCGCCgucgGCCGgacgggggggaggaCGGCGGGGaggaCGGCGGCg -3'
miRNA:   3'- uGCGGa---UGGC--------------GCCGCCCCg---GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 60742 0.72 0.316722
Target:  5'- cCGCg-ACCGCGGCGgccGGGCgGACGAg -3'
miRNA:   3'- uGCGgaUGGCGCCGC---CCCGgCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 97197 0.72 0.323419
Target:  5'- gACGCCcguCUGCGGCGgcGGGCCgGGCGGg -3'
miRNA:   3'- -UGCGGau-GGCGCCGC--CCCGG-CUGCUg -5'
8949 3' -64.4 NC_002512.2 + 133916 0.72 0.323419
Target:  5'- -gGCCUACCuccugcuguaCGGCGGcGGcCCGACGGCc -3'
miRNA:   3'- ugCGGAUGGc---------GCCGCC-CC-GGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 11666 0.72 0.323419
Target:  5'- gGCGCCgcggcccGCCGCGGCccgaggcgGGGGCCcgaggGGCGAg -3'
miRNA:   3'- -UGCGGa------UGGCGCCG--------CCCCGG-----CUGCUg -5'
8949 3' -64.4 NC_002512.2 + 42578 0.73 0.266916
Target:  5'- gGCGCCgcgagGCgaGCGGCGGGGCgGACc-- -3'
miRNA:   3'- -UGCGGa----UGg-CGCCGCCCCGgCUGcug -5'
8949 3' -64.4 NC_002512.2 + 38930 0.73 0.266916
Target:  5'- -gGCC-GCCGCGGCGGGcGCCcGCGuGCg -3'
miRNA:   3'- ugCGGaUGGCGCCGCCC-CGGcUGC-UG- -5'
8949 3' -64.4 NC_002512.2 + 100134 0.74 0.244481
Target:  5'- cCGUCguggACgGCGGCGGaccGGUCGACGACa -3'
miRNA:   3'- uGCGGa---UGgCGCCGCC---CCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 75560 0.74 0.244481
Target:  5'- -gGCUcGCCGgGGCGGGGCCGcCGcCg -3'
miRNA:   3'- ugCGGaUGGCgCCGCCCCGGCuGCuG- -5'
8949 3' -64.4 NC_002512.2 + 100051 0.74 0.244481
Target:  5'- gGCGCUgagACgcggggGCGGCGGcGCCGACGACg -3'
miRNA:   3'- -UGCGGa--UGg-----CGCCGCCcCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 109936 0.74 0.244481
Target:  5'- aGCGCCacgaaguccACCGCGuGCGGGGgCGACGcCg -3'
miRNA:   3'- -UGCGGa--------UGGCGC-CGCCCCgGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 97162 0.74 0.249939
Target:  5'- uGCGCCUGCgGCaGC-GGGCCGAgGAUc -3'
miRNA:   3'- -UGCGGAUGgCGcCGcCCCGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 96304 0.74 0.261155
Target:  5'- cCGCC-GCCGCgGGCGGGccggucGCCGcACGACa -3'
miRNA:   3'- uGCGGaUGGCG-CCGCCC------CGGC-UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 128188 0.74 0.261155
Target:  5'- uCGCCgagcggGCCGcCGGCGGGaCCGGgGACg -3'
miRNA:   3'- uGCGGa-----UGGC-GCCGCCCcGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 102152 0.73 0.266916
Target:  5'- -gGCCgcgACCGCGGCuGGGUCGuCGAUc -3'
miRNA:   3'- ugCGGa--UGGCGCCGcCCCGGCuGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.