Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8949 | 5' | -59.4 | NC_002512.2 | + | 187423 | 0.69 | 0.679952 |
Target: 5'- gUGuCUGUCCGCugccgcuucauuCUUCGCCGAGGAg-- -3' miRNA: 3'- gAC-GACAGGUG------------GAGGCGGCUCCUgaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 220138 | 0.69 | 0.679952 |
Target: 5'- -gGCggGUCCGgCUCCGCCGcccccaAGGGCg- -3' miRNA: 3'- gaCGa-CAGGUgGAGGCGGC------UCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 15 | 0.69 | 0.679952 |
Target: 5'- -gGCcgGUCCuCCUCCcCCGGGGGCg- -3' miRNA: 3'- gaCGa-CAGGuGGAGGcGGCUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 85596 | 0.69 | 0.679952 |
Target: 5'- -cGC-GUCCgcguucggguGCCUCCGCCGccucuGGGACUUc -3' miRNA: 3'- gaCGaCAGG----------UGGAGGCGGC-----UCCUGAA- -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 229419 | 0.69 | 0.679952 |
Target: 5'- -gGCcgGUCCuCCUCCcCCGGGGGCg- -3' miRNA: 3'- gaCGa-CAGGuGGAGGcGGCUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 139188 | 0.69 | 0.679952 |
Target: 5'- --cCUGUCaCGCCgacgCCGUCGAGGACc- -3' miRNA: 3'- gacGACAG-GUGGa---GGCGGCUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 119072 | 0.69 | 0.699388 |
Target: 5'- gCUGCUGUCCcucgACCggUCGCgCGAGGAg-- -3' miRNA: 3'- -GACGACAGG----UGGa-GGCG-GCUCCUgaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 124176 | 0.68 | 0.718614 |
Target: 5'- -gGgaGUgCACCuggcugcucgUCCGCCGGGGACa- -3' miRNA: 3'- gaCgaCAgGUGG----------AGGCGGCUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 48850 | 0.68 | 0.718614 |
Target: 5'- -gGCUGUgCgGCCUCCuGCCcAGGACg- -3' miRNA: 3'- gaCGACA-GgUGGAGG-CGGcUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 147468 | 0.68 | 0.728129 |
Target: 5'- ----cGUCC-CCUCCGCCGcGGGACc- -3' miRNA: 3'- gacgaCAGGuGGAGGCGGC-UCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 1984 | 0.68 | 0.74692 |
Target: 5'- -cGC-GUCCGUCUCCGCCucGGACUc -3' miRNA: 3'- gaCGaCAGGUGGAGGCGGcuCCUGAa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 101045 | 0.67 | 0.762601 |
Target: 5'- -cGCUGUCguuCACCUCCccggcgaacccggcGUCGAGGGCc- -3' miRNA: 3'- gaCGACAG---GUGGAGG--------------CGGCUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 77166 | 0.67 | 0.765338 |
Target: 5'- uCUGCgUGUCCccugcccgccgcACC-CCGaCCGGGGACg- -3' miRNA: 3'- -GACG-ACAGG------------UGGaGGC-GGCUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 101446 | 0.67 | 0.783318 |
Target: 5'- cCUGCUGggCCAUggCCGCCcgcgagGAGGGCUc -3' miRNA: 3'- -GACGACa-GGUGgaGGCGG------CUCCUGAa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 12049 | 0.67 | 0.783318 |
Target: 5'- -cGCUG-CCGCCUCUGCCGAa----- -3' miRNA: 3'- gaCGACaGGUGGAGGCGGCUccugaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 128552 | 0.67 | 0.791248 |
Target: 5'- aUGUcacaUGUCCACCUUCGacggccuCCGGGGGCc- -3' miRNA: 3'- gACG----ACAGGUGGAGGC-------GGCUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 110422 | 0.67 | 0.791248 |
Target: 5'- -cGCcuUCCACUUCCGCCcgaucuagaggcgGAGGACg- -3' miRNA: 3'- gaCGacAGGUGGAGGCGG-------------CUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 4716 | 0.67 | 0.800795 |
Target: 5'- aCUGCUG-CUGCUgcaacgCCGCCGAcGACUg -3' miRNA: 3'- -GACGACaGGUGGa-----GGCGGCUcCUGAa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 220296 | 0.67 | 0.800795 |
Target: 5'- --cCUGcCCGCCgagCCGCCGGGGGg-- -3' miRNA: 3'- gacGACaGGUGGa--GGCGGCUCCUgaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 219543 | 0.67 | 0.809326 |
Target: 5'- -gGCgUGcCCACCggacggucUUCGCCGGGGACg- -3' miRNA: 3'- gaCG-ACaGGUGG--------AGGCGGCUCCUGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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