Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8949 | 5' | -59.4 | NC_002512.2 | + | 101401 | 0.66 | 0.841889 |
Target: 5'- -cGCUGUCCGCCgaCCGCUGucG-CUg -3' miRNA: 3'- gaCGACAGGUGGa-GGCGGCucCuGAa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 101446 | 0.67 | 0.783318 |
Target: 5'- cCUGCUGggCCAUggCCGCCcgcgagGAGGGCUc -3' miRNA: 3'- -GACGACa-GGUGgaGGCGG------CUCCUGAa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 106035 | 0.67 | 0.812697 |
Target: 5'- gUGCggcGUCC-UCUCCgccacgcagaucacgGCCGGGGACUUg -3' miRNA: 3'- gACGa--CAGGuGGAGG---------------CGGCUCCUGAA- -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 110422 | 0.67 | 0.791248 |
Target: 5'- -cGCcuUCCACUUCCGCCcgaucuagaggcgGAGGACg- -3' miRNA: 3'- gaCGacAGGUGGAGGCGG-------------CUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 119072 | 0.69 | 0.699388 |
Target: 5'- gCUGCUGUCCcucgACCggUCGCgCGAGGAg-- -3' miRNA: 3'- -GACGACAGG----UGGa-GGCG-GCUCCUgaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 123963 | 0.73 | 0.468612 |
Target: 5'- ----aGUCCGCCUCC-CCGAGGACc- -3' miRNA: 3'- gacgaCAGGUGGAGGcGGCUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 124176 | 0.68 | 0.718614 |
Target: 5'- -gGgaGUgCACCuggcugcucgUCCGCCGGGGACa- -3' miRNA: 3'- gaCgaCAgGUGG----------AGGCGGCUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 128552 | 0.67 | 0.791248 |
Target: 5'- aUGUcacaUGUCCACCUUCGacggccuCCGGGGGCc- -3' miRNA: 3'- gACG----ACAGGUGGAGGC-------GGCUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 133568 | 0.69 | 0.650544 |
Target: 5'- aCUGC-GUCC-CCaucgaCCGCCGGGGACc- -3' miRNA: 3'- -GACGaCAGGuGGa----GGCGGCUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 139188 | 0.69 | 0.679952 |
Target: 5'- --cCUGUCaCGCCgacgCCGUCGAGGACc- -3' miRNA: 3'- gacGACAG-GUGGa---GGCGGCUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 145440 | 0.66 | 0.825934 |
Target: 5'- gUGCUGgacgagauccUCCGCCUCaacgacaaGaCCGAGGACc- -3' miRNA: 3'- gACGAC----------AGGUGGAGg-------C-GGCUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 145903 | 0.66 | 0.849605 |
Target: 5'- gCUGCgcgaCCGCCccgcgccgggcaUCCGCCGccGGGACUUc -3' miRNA: 3'- -GACGaca-GGUGG------------AGGCGGC--UCCUGAA- -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 147468 | 0.68 | 0.728129 |
Target: 5'- ----cGUCC-CCUCCGCCGcGGGACc- -3' miRNA: 3'- gacgaCAGGuGGAGGCGGC-UCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 150018 | 0.66 | 0.825934 |
Target: 5'- -gGCUcUCUuCCUCCuCCGAGGACg- -3' miRNA: 3'- gaCGAcAGGuGGAGGcGGCUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 155588 | 0.71 | 0.572038 |
Target: 5'- ----cGUCCuguCCUCCGUCGAGGACc- -3' miRNA: 3'- gacgaCAGGu--GGAGGCGGCUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 156428 | 0.7 | 0.630859 |
Target: 5'- aUGCUGUCCGCggCCGggcuggggggcuCCGGGGGCg- -3' miRNA: 3'- gACGACAGGUGgaGGC------------GGCUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 167088 | 0.7 | 0.611177 |
Target: 5'- gCUGCUGgCCACCUCCGCguacaugGAGcGGCa- -3' miRNA: 3'- -GACGACaGGUGGAGGCGg------CUC-CUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 168704 | 0.7 | 0.601354 |
Target: 5'- aUGCUGUCCGacgCCGUCGGGGAg-- -3' miRNA: 3'- gACGACAGGUggaGGCGGCUCCUgaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 174334 | 0.66 | 0.817708 |
Target: 5'- -gGCggggGUCCGCCgcgcccucgUCCGCCG-GGAUg- -3' miRNA: 3'- gaCGa---CAGGUGG---------AGGCGGCuCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 176614 | 0.66 | 0.825934 |
Target: 5'- gUGUcGaucUCCACC-CCGUCGGGGGCUc -3' miRNA: 3'- gACGaC---AGGUGGaGGCGGCUCCUGAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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