Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8949 | 5' | -59.4 | NC_002512.2 | + | 15 | 0.69 | 0.679952 |
Target: 5'- -gGCcgGUCCuCCUCCcCCGGGGGCg- -3' miRNA: 3'- gaCGa-CAGGuGGAGGcGGCUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 1984 | 0.68 | 0.74692 |
Target: 5'- -cGC-GUCCGUCUCCGCCucGGACUc -3' miRNA: 3'- gaCGaCAGGUGGAGGCGGcuCCUGAa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 4716 | 0.67 | 0.800795 |
Target: 5'- aCUGCUG-CUGCUgcaacgCCGCCGAcGACUg -3' miRNA: 3'- -GACGACaGGUGGa-----GGCGGCUcCUGAa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 12049 | 0.67 | 0.783318 |
Target: 5'- -cGCUG-CCGCCUCUGCCGAa----- -3' miRNA: 3'- gaCGACaGGUGGAGGCGGCUccugaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 12757 | 0.71 | 0.572038 |
Target: 5'- -aGCUGggcCCGCUgcugCCGCCGcAGGACUc -3' miRNA: 3'- gaCGACa--GGUGGa---GGCGGC-UCCUGAa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 14679 | 0.69 | 0.670176 |
Target: 5'- -cGUUGUCCGCC-CCGCCGAcGAa-- -3' miRNA: 3'- gaCGACAGGUGGaGGCGGCUcCUgaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 29246 | 0.71 | 0.562337 |
Target: 5'- -cGCaGUCCGuCCUCCGaCGGGGACg- -3' miRNA: 3'- gaCGaCAGGU-GGAGGCgGCUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 31466 | 0.66 | 0.833996 |
Target: 5'- cCUGCUGggCCACCUCgGa-GAcGGGCUg -3' miRNA: 3'- -GACGACa-GGUGGAGgCggCU-CCUGAa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 34283 | 0.66 | 0.817708 |
Target: 5'- -aGgUGgCCGCC-CCGCCGAGGugACUg -3' miRNA: 3'- gaCgACaGGUGGaGGCGGCUCC--UGAa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 48850 | 0.68 | 0.718614 |
Target: 5'- -gGCUGUgCgGCCUCCuGCCcAGGACg- -3' miRNA: 3'- gaCGACA-GgUGGAGG-CGGcUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 65428 | 0.71 | 0.572038 |
Target: 5'- -gGCgGUCguCGCCcCCGCCGAGGGCg- -3' miRNA: 3'- gaCGaCAG--GUGGaGGCGGCUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 75128 | 0.66 | 0.833996 |
Target: 5'- gCUGCUGgugguggUCACCgCCaCCGGGGGCg- -3' miRNA: 3'- -GACGACa------GGUGGaGGcGGCUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 77065 | 0.66 | 0.817708 |
Target: 5'- gCUGCUGaUCCugCUCgccgcccgccguCGCCGcGGACc- -3' miRNA: 3'- -GACGAC-AGGugGAG------------GCGGCuCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 77166 | 0.67 | 0.765338 |
Target: 5'- uCUGCgUGUCCccugcccgccgcACC-CCGaCCGGGGACg- -3' miRNA: 3'- -GACG-ACAGG------------UGGaGGC-GGCUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 81794 | 0.66 | 0.841889 |
Target: 5'- -gGCg--CCGCCgccgCCGCCGgGGGACg- -3' miRNA: 3'- gaCGacaGGUGGa---GGCGGC-UCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 83782 | 0.72 | 0.48677 |
Target: 5'- -gGCg--CCGCCgccgCCGCCGAGGACc- -3' miRNA: 3'- gaCGacaGGUGGa---GGCGGCUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 85596 | 0.69 | 0.679952 |
Target: 5'- -cGC-GUCCgcguucggguGCCUCCGCCGccucuGGGACUUc -3' miRNA: 3'- gaCGaCAGG----------UGGAGGCGGC-----UCCUGAA- -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 95043 | 0.66 | 0.817708 |
Target: 5'- -gGCUGUgCguguaguagGCCUCCGCCGucGGCa- -3' miRNA: 3'- gaCGACAgG---------UGGAGGCGGCucCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 95683 | 0.69 | 0.66037 |
Target: 5'- -cGC-GUCCgccggGCCUCCGgCGGGGACg- -3' miRNA: 3'- gaCGaCAGG-----UGGAGGCgGCUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 101045 | 0.67 | 0.762601 |
Target: 5'- -cGCUGUCguuCACCUCCccggcgaacccggcGUCGAGGGCc- -3' miRNA: 3'- gaCGACAG---GUGGAGG--------------CGGCUCCUGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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