miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 5' -59.4 NC_002512.2 + 95043 0.66 0.817708
Target:  5'- -gGCUGUgCguguaguagGCCUCCGCCGucGGCa- -3'
miRNA:   3'- gaCGACAgG---------UGGAGGCGGCucCUGaa -5'
8949 5' -59.4 NC_002512.2 + 77065 0.66 0.817708
Target:  5'- gCUGCUGaUCCugCUCgccgcccgccguCGCCGcGGACc- -3'
miRNA:   3'- -GACGAC-AGGugGAG------------GCGGCuCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 174334 0.66 0.817708
Target:  5'- -gGCggggGUCCGCCgcgcccucgUCCGCCG-GGAUg- -3'
miRNA:   3'- gaCGa---CAGGUGG---------AGGCGGCuCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 176614 0.66 0.825934
Target:  5'- gUGUcGaucUCCACC-CCGUCGGGGGCUc -3'
miRNA:   3'- gACGaC---AGGUGGaGGCGGCUCCUGAa -5'
8949 5' -59.4 NC_002512.2 + 75128 0.66 0.833996
Target:  5'- gCUGCUGgugguggUCACCgCCaCCGGGGGCg- -3'
miRNA:   3'- -GACGACa------GGUGGaGGcGGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 213032 0.66 0.833996
Target:  5'- gUGC-GUCCGCCggCUGCgGGGGAUc- -3'
miRNA:   3'- gACGaCAGGUGGa-GGCGgCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 145903 0.66 0.849605
Target:  5'- gCUGCgcgaCCGCCccgcgccgggcaUCCGCCGccGGGACUUc -3'
miRNA:   3'- -GACGaca-GGUGG------------AGGCGGC--UCCUGAA- -5'
8949 5' -59.4 NC_002512.2 + 145440 0.66 0.825934
Target:  5'- gUGCUGgacgagauccUCCGCCUCaacgacaaGaCCGAGGACc- -3'
miRNA:   3'- gACGAC----------AGGUGGAGg-------C-GGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 34283 0.66 0.817708
Target:  5'- -aGgUGgCCGCC-CCGCCGAGGugACUg -3'
miRNA:   3'- gaCgACaGGUGGaGGCGGCUCC--UGAa -5'
8949 5' -59.4 NC_002512.2 + 31466 0.66 0.833996
Target:  5'- cCUGCUGggCCACCUCgGa-GAcGGGCUg -3'
miRNA:   3'- -GACGACa-GGUGGAGgCggCU-CCUGAa -5'
8949 5' -59.4 NC_002512.2 + 224911 0.66 0.849605
Target:  5'- -cGCcGUCUgcACCUCCGUCGcgGGGACc- -3'
miRNA:   3'- gaCGaCAGG--UGGAGGCGGC--UCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 81794 0.66 0.841889
Target:  5'- -gGCg--CCGCCgccgCCGCCGgGGGACg- -3'
miRNA:   3'- gaCGacaGGUGGa---GGCGGC-UCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 101401 0.66 0.841889
Target:  5'- -cGCUGUCCGCCgaCCGCUGucG-CUg -3'
miRNA:   3'- gaCGACAGGUGGa-GGCGGCucCuGAa -5'
8949 5' -59.4 NC_002512.2 + 150018 0.66 0.825934
Target:  5'- -gGCUcUCUuCCUCCuCCGAGGACg- -3'
miRNA:   3'- gaCGAcAGGuGGAGGcGGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 106035 0.67 0.812697
Target:  5'- gUGCggcGUCC-UCUCCgccacgcagaucacgGCCGGGGACUUg -3'
miRNA:   3'- gACGa--CAGGuGGAGG---------------CGGCUCCUGAA- -5'
8949 5' -59.4 NC_002512.2 + 4716 0.67 0.800795
Target:  5'- aCUGCUG-CUGCUgcaacgCCGCCGAcGACUg -3'
miRNA:   3'- -GACGACaGGUGGa-----GGCGGCUcCUGAa -5'
8949 5' -59.4 NC_002512.2 + 128552 0.67 0.791248
Target:  5'- aUGUcacaUGUCCACCUUCGacggccuCCGGGGGCc- -3'
miRNA:   3'- gACG----ACAGGUGGAGGC-------GGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 101446 0.67 0.783318
Target:  5'- cCUGCUGggCCAUggCCGCCcgcgagGAGGGCUc -3'
miRNA:   3'- -GACGACa-GGUGgaGGCGG------CUCCUGAa -5'
8949 5' -59.4 NC_002512.2 + 12049 0.67 0.783318
Target:  5'- -cGCUG-CCGCCUCUGCCGAa----- -3'
miRNA:   3'- gaCGACaGGUGGAGGCGGCUccugaa -5'
8949 5' -59.4 NC_002512.2 + 77166 0.67 0.765338
Target:  5'- uCUGCgUGUCCccugcccgccgcACC-CCGaCCGGGGACg- -3'
miRNA:   3'- -GACG-ACAGG------------UGGaGGC-GGCUCCUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.