miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 5' -59.4 NC_002512.2 + 34283 0.66 0.817708
Target:  5'- -aGgUGgCCGCC-CCGCCGAGGugACUg -3'
miRNA:   3'- gaCgACaGGUGGaGGCGGCUCC--UGAa -5'
8949 5' -59.4 NC_002512.2 + 124176 0.68 0.718614
Target:  5'- -gGgaGUgCACCuggcugcucgUCCGCCGGGGACa- -3'
miRNA:   3'- gaCgaCAgGUGG----------AGGCGGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 1984 0.68 0.74692
Target:  5'- -cGC-GUCCGUCUCCGCCucGGACUc -3'
miRNA:   3'- gaCGaCAGGUGGAGGCGGcuCCUGAa -5'
8949 5' -59.4 NC_002512.2 + 77166 0.67 0.765338
Target:  5'- uCUGCgUGUCCccugcccgccgcACC-CCGaCCGGGGACg- -3'
miRNA:   3'- -GACG-ACAGG------------UGGaGGC-GGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 12049 0.67 0.783318
Target:  5'- -cGCUG-CCGCCUCUGCCGAa----- -3'
miRNA:   3'- gaCGACaGGUGGAGGCGGCUccugaa -5'
8949 5' -59.4 NC_002512.2 + 101446 0.67 0.783318
Target:  5'- cCUGCUGggCCAUggCCGCCcgcgagGAGGGCUc -3'
miRNA:   3'- -GACGACa-GGUGgaGGCGG------CUCCUGAa -5'
8949 5' -59.4 NC_002512.2 + 128552 0.67 0.791248
Target:  5'- aUGUcacaUGUCCACCUUCGacggccuCCGGGGGCc- -3'
miRNA:   3'- gACG----ACAGGUGGAGGC-------GGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 4716 0.67 0.800795
Target:  5'- aCUGCUG-CUGCUgcaacgCCGCCGAcGACUg -3'
miRNA:   3'- -GACGACaGGUGGa-----GGCGGCUcCUGAa -5'
8949 5' -59.4 NC_002512.2 + 106035 0.67 0.812697
Target:  5'- gUGCggcGUCC-UCUCCgccacgcagaucacgGCCGGGGACUUg -3'
miRNA:   3'- gACGa--CAGGuGGAGG---------------CGGCUCCUGAA- -5'
8949 5' -59.4 NC_002512.2 + 48850 0.68 0.718614
Target:  5'- -gGCUGUgCgGCCUCCuGCCcAGGACg- -3'
miRNA:   3'- gaCGACA-GgUGGAGG-CGGcUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 139188 0.69 0.679952
Target:  5'- --cCUGUCaCGCCgacgCCGUCGAGGACc- -3'
miRNA:   3'- gacGACAG-GUGGa---GGCGGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 229419 0.69 0.679952
Target:  5'- -gGCcgGUCCuCCUCCcCCGGGGGCg- -3'
miRNA:   3'- gaCGa-CAGGuGGAGGcGGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 83782 0.72 0.48677
Target:  5'- -gGCg--CCGCCgccgCCGCCGAGGACc- -3'
miRNA:   3'- gaCGacaGGUGGa---GGCGGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 29246 0.71 0.562337
Target:  5'- -cGCaGUCCGuCCUCCGaCGGGGACg- -3'
miRNA:   3'- gaCGaCAGGU-GGAGGCgGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 65428 0.71 0.572038
Target:  5'- -gGCgGUCguCGCCcCCGCCGAGGGCg- -3'
miRNA:   3'- gaCGaCAG--GUGGaGGCGGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 12757 0.71 0.572038
Target:  5'- -aGCUGggcCCGCUgcugCCGCCGcAGGACUc -3'
miRNA:   3'- gaCGACa--GGUGGa---GGCGGC-UCCUGAa -5'
8949 5' -59.4 NC_002512.2 + 133568 0.69 0.650544
Target:  5'- aCUGC-GUCC-CCaucgaCCGCCGGGGACc- -3'
miRNA:   3'- -GACGaCAGGuGGa----GGCGGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 14679 0.69 0.670176
Target:  5'- -cGUUGUCCGCC-CCGCCGAcGAa-- -3'
miRNA:   3'- gaCGACAGGUGGaGGCGGCUcCUgaa -5'
8949 5' -59.4 NC_002512.2 + 15 0.69 0.679952
Target:  5'- -gGCcgGUCCuCCUCCcCCGGGGGCg- -3'
miRNA:   3'- gaCGa-CAGGuGGAGGcGGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 85596 0.69 0.679952
Target:  5'- -cGC-GUCCgcguucggguGCCUCCGCCGccucuGGGACUUc -3'
miRNA:   3'- gaCGaCAGG----------UGGAGGCGGC-----UCCUGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.