miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 5' -59.4 NC_002512.2 + 219152 1.05 0.003903
Target:  5'- cCUGCUGUCCACCUCCGCCGAGGACUUc -3'
miRNA:   3'- -GACGACAGGUGGAGGCGGCUCCUGAA- -5'
8949 5' -59.4 NC_002512.2 + 181395 0.75 0.337683
Target:  5'- gUGCg--CCcugGCCUCCGCCGGGGACg- -3'
miRNA:   3'- gACGacaGG---UGGAGGCGGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 226188 0.75 0.345045
Target:  5'- -aGCgaccggGUCgACCUCCGUCGGGGACg- -3'
miRNA:   3'- gaCGa-----CAGgUGGAGGCGGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 123963 0.73 0.468612
Target:  5'- ----aGUCCGCCUCC-CCGAGGACc- -3'
miRNA:   3'- gacgaCAGGUGGAGGcGGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 179086 0.72 0.48677
Target:  5'- uUGCUG-CCGCUgaUCC-CCGAGGACUUc -3'
miRNA:   3'- gACGACaGGUGG--AGGcGGCUCCUGAA- -5'
8949 5' -59.4 NC_002512.2 + 83782 0.72 0.48677
Target:  5'- -gGCg--CCGCCgccgCCGCCGAGGACc- -3'
miRNA:   3'- gaCGacaGGUGGa---GGCGGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 29246 0.71 0.562337
Target:  5'- -cGCaGUCCGuCCUCCGaCGGGGACg- -3'
miRNA:   3'- gaCGaCAGGU-GGAGGCgGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 65428 0.71 0.572038
Target:  5'- -gGCgGUCguCGCCcCCGCCGAGGGCg- -3'
miRNA:   3'- gaCGaCAG--GUGGaGGCGGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 12757 0.71 0.572038
Target:  5'- -aGCUGggcCCGCUgcugCCGCCGcAGGACUc -3'
miRNA:   3'- gaCGACa--GGUGGa---GGCGGC-UCCUGAa -5'
8949 5' -59.4 NC_002512.2 + 155588 0.71 0.572038
Target:  5'- ----cGUCCuguCCUCCGUCGAGGACc- -3'
miRNA:   3'- gacgaCAGGu--GGAGGCGGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 168704 0.7 0.601354
Target:  5'- aUGCUGUCCGacgCCGUCGGGGAg-- -3'
miRNA:   3'- gACGACAGGUggaGGCGGCUCCUgaa -5'
8949 5' -59.4 NC_002512.2 + 213554 0.7 0.611177
Target:  5'- gCUGCgcgggGUCCGCCUCgaGagGAGGACUUg -3'
miRNA:   3'- -GACGa----CAGGUGGAGg-CggCUCCUGAA- -5'
8949 5' -59.4 NC_002512.2 + 167088 0.7 0.611177
Target:  5'- gCUGCUGgCCACCUCCGCguacaugGAGcGGCa- -3'
miRNA:   3'- -GACGACaGGUGGAGGCGg------CUC-CUGaa -5'
8949 5' -59.4 NC_002512.2 + 156428 0.7 0.630859
Target:  5'- aUGCUGUCCGCggCCGggcuggggggcuCCGGGGGCg- -3'
miRNA:   3'- gACGACAGGUGgaGGC------------GGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 185641 0.7 0.630859
Target:  5'- -aGCUGUCCgACCUCC-UgGGGGACg- -3'
miRNA:   3'- gaCGACAGG-UGGAGGcGgCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 192179 0.7 0.630859
Target:  5'- -cGCUGUCCGuCCUgCGCCgcggcugggGAGGACc- -3'
miRNA:   3'- gaCGACAGGU-GGAgGCGG---------CUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 133568 0.69 0.650544
Target:  5'- aCUGC-GUCC-CCaucgaCCGCCGGGGACc- -3'
miRNA:   3'- -GACGaCAGGuGGa----GGCGGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 95683 0.69 0.66037
Target:  5'- -cGC-GUCCgccggGCCUCCGgCGGGGACg- -3'
miRNA:   3'- gaCGaCAGG-----UGGAGGCgGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 14679 0.69 0.670176
Target:  5'- -cGUUGUCCGCC-CCGCCGAcGAa-- -3'
miRNA:   3'- gaCGACAGGUGGaGGCGGCUcCUgaa -5'
8949 5' -59.4 NC_002512.2 + 15 0.69 0.679952
Target:  5'- -gGCcgGUCCuCCUCCcCCGGGGGCg- -3'
miRNA:   3'- gaCGa-CAGGuGGAGGcGGCUCCUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.