miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 5' -59.4 NC_002512.2 + 224911 0.66 0.849605
Target:  5'- -cGCcGUCUgcACCUCCGUCGcgGGGACc- -3'
miRNA:   3'- gaCGaCAGG--UGGAGGCGGC--UCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 187423 0.69 0.679952
Target:  5'- gUGuCUGUCCGCugccgcuucauuCUUCGCCGAGGAg-- -3'
miRNA:   3'- gAC-GACAGGUG------------GAGGCGGCUCCUgaa -5'
8949 5' -59.4 NC_002512.2 + 156428 0.7 0.630859
Target:  5'- aUGCUGUCCGCggCCGggcuggggggcuCCGGGGGCg- -3'
miRNA:   3'- gACGACAGGUGgaGGC------------GGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 219152 1.05 0.003903
Target:  5'- cCUGCUGUCCACCUCCGCCGAGGACUUc -3'
miRNA:   3'- -GACGACAGGUGGAGGCGGCUCCUGAA- -5'
8949 5' -59.4 NC_002512.2 + 176614 0.66 0.825934
Target:  5'- gUGUcGaucUCCACC-CCGUCGGGGGCUc -3'
miRNA:   3'- gACGaC---AGGUGGaGGCGGCUCCUGAa -5'
8949 5' -59.4 NC_002512.2 + 150018 0.66 0.825934
Target:  5'- -gGCUcUCUuCCUCCuCCGAGGACg- -3'
miRNA:   3'- gaCGAcAGGuGGAGGcGGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 174334 0.66 0.817708
Target:  5'- -gGCggggGUCCGCCgcgcccucgUCCGCCG-GGAUg- -3'
miRNA:   3'- gaCGa---CAGGUGG---------AGGCGGCuCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 77065 0.66 0.817708
Target:  5'- gCUGCUGaUCCugCUCgccgcccgccguCGCCGcGGACc- -3'
miRNA:   3'- -GACGAC-AGGugGAG------------GCGGCuCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 110422 0.67 0.791248
Target:  5'- -cGCcuUCCACUUCCGCCcgaucuagaggcgGAGGACg- -3'
miRNA:   3'- gaCGacAGGUGGAGGCGG-------------CUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 220138 0.69 0.679952
Target:  5'- -gGCggGUCCGgCUCCGCCGcccccaAGGGCg- -3'
miRNA:   3'- gaCGa-CAGGUgGAGGCGGC------UCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 147468 0.68 0.728129
Target:  5'- ----cGUCC-CCUCCGCCGcGGGACc- -3'
miRNA:   3'- gacgaCAGGuGGAGGCGGC-UCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 220296 0.67 0.800795
Target:  5'- --cCUGcCCGCCgagCCGCCGGGGGg-- -3'
miRNA:   3'- gacGACaGGUGGa--GGCGGCUCCUgaa -5'
8949 5' -59.4 NC_002512.2 + 145903 0.66 0.849605
Target:  5'- gCUGCgcgaCCGCCccgcgccgggcaUCCGCCGccGGGACUUc -3'
miRNA:   3'- -GACGaca-GGUGG------------AGGCGGC--UCCUGAA- -5'
8949 5' -59.4 NC_002512.2 + 119072 0.69 0.699388
Target:  5'- gCUGCUGUCCcucgACCggUCGCgCGAGGAg-- -3'
miRNA:   3'- -GACGACAGG----UGGa-GGCG-GCUCCUgaa -5'
8949 5' -59.4 NC_002512.2 + 213032 0.66 0.833996
Target:  5'- gUGC-GUCCGCCggCUGCgGGGGAUc- -3'
miRNA:   3'- gACGaCAGGUGGa-GGCGgCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 219543 0.67 0.809326
Target:  5'- -gGCgUGcCCACCggacggucUUCGCCGGGGACg- -3'
miRNA:   3'- gaCG-ACaGGUGG--------AGGCGGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 184912 0.69 0.679952
Target:  5'- -cGCUacugCC-CCUUCGCCGAGGACc- -3'
miRNA:   3'- gaCGAca--GGuGGAGGCGGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 95683 0.69 0.66037
Target:  5'- -cGC-GUCCgccggGCCUCCGgCGGGGACg- -3'
miRNA:   3'- gaCGaCAGG-----UGGAGGCgGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 75128 0.66 0.833996
Target:  5'- gCUGCUGgugguggUCACCgCCaCCGGGGGCg- -3'
miRNA:   3'- -GACGACa------GGUGGaGGcGGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 145440 0.66 0.825934
Target:  5'- gUGCUGgacgagauccUCCGCCUCaacgacaaGaCCGAGGACc- -3'
miRNA:   3'- gACGAC----------AGGUGGAGg-------C-GGCUCCUGaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.