Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8949 | 5' | -59.4 | NC_002512.2 | + | 229419 | 0.69 | 0.679952 |
Target: 5'- -gGCcgGUCCuCCUCCcCCGGGGGCg- -3' miRNA: 3'- gaCGa-CAGGuGGAGGcGGCUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 226188 | 0.75 | 0.345045 |
Target: 5'- -aGCgaccggGUCgACCUCCGUCGGGGACg- -3' miRNA: 3'- gaCGa-----CAGgUGGAGGCGGCUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 224911 | 0.66 | 0.849605 |
Target: 5'- -cGCcGUCUgcACCUCCGUCGcgGGGACc- -3' miRNA: 3'- gaCGaCAGG--UGGAGGCGGC--UCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 220296 | 0.67 | 0.800795 |
Target: 5'- --cCUGcCCGCCgagCCGCCGGGGGg-- -3' miRNA: 3'- gacGACaGGUGGa--GGCGGCUCCUgaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 220138 | 0.69 | 0.679952 |
Target: 5'- -gGCggGUCCGgCUCCGCCGcccccaAGGGCg- -3' miRNA: 3'- gaCGa-CAGGUgGAGGCGGC------UCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 219543 | 0.67 | 0.809326 |
Target: 5'- -gGCgUGcCCACCggacggucUUCGCCGGGGACg- -3' miRNA: 3'- gaCG-ACaGGUGG--------AGGCGGCUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 219152 | 1.05 | 0.003903 |
Target: 5'- cCUGCUGUCCACCUCCGCCGAGGACUUc -3' miRNA: 3'- -GACGACAGGUGGAGGCGGCUCCUGAA- -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 213554 | 0.7 | 0.611177 |
Target: 5'- gCUGCgcgggGUCCGCCUCgaGagGAGGACUUg -3' miRNA: 3'- -GACGa----CAGGUGGAGg-CggCUCCUGAA- -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 213032 | 0.66 | 0.833996 |
Target: 5'- gUGC-GUCCGCCggCUGCgGGGGAUc- -3' miRNA: 3'- gACGaCAGGUGGa-GGCGgCUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 192179 | 0.7 | 0.630859 |
Target: 5'- -cGCUGUCCGuCCUgCGCCgcggcugggGAGGACc- -3' miRNA: 3'- gaCGACAGGU-GGAgGCGG---------CUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 187423 | 0.69 | 0.679952 |
Target: 5'- gUGuCUGUCCGCugccgcuucauuCUUCGCCGAGGAg-- -3' miRNA: 3'- gAC-GACAGGUG------------GAGGCGGCUCCUgaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 185641 | 0.7 | 0.630859 |
Target: 5'- -aGCUGUCCgACCUCC-UgGGGGACg- -3' miRNA: 3'- gaCGACAGG-UGGAGGcGgCUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 184912 | 0.69 | 0.679952 |
Target: 5'- -cGCUacugCC-CCUUCGCCGAGGACc- -3' miRNA: 3'- gaCGAca--GGuGGAGGCGGCUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 181395 | 0.75 | 0.337683 |
Target: 5'- gUGCg--CCcugGCCUCCGCCGGGGACg- -3' miRNA: 3'- gACGacaGG---UGGAGGCGGCUCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 179086 | 0.72 | 0.48677 |
Target: 5'- uUGCUG-CCGCUgaUCC-CCGAGGACUUc -3' miRNA: 3'- gACGACaGGUGG--AGGcGGCUCCUGAA- -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 176614 | 0.66 | 0.825934 |
Target: 5'- gUGUcGaucUCCACC-CCGUCGGGGGCUc -3' miRNA: 3'- gACGaC---AGGUGGaGGCGGCUCCUGAa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 174334 | 0.66 | 0.817708 |
Target: 5'- -gGCggggGUCCGCCgcgcccucgUCCGCCG-GGAUg- -3' miRNA: 3'- gaCGa---CAGGUGG---------AGGCGGCuCCUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 168704 | 0.7 | 0.601354 |
Target: 5'- aUGCUGUCCGacgCCGUCGGGGAg-- -3' miRNA: 3'- gACGACAGGUggaGGCGGCUCCUgaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 167088 | 0.7 | 0.611177 |
Target: 5'- gCUGCUGgCCACCUCCGCguacaugGAGcGGCa- -3' miRNA: 3'- -GACGACaGGUGGAGGCGg------CUC-CUGaa -5' |
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8949 | 5' | -59.4 | NC_002512.2 | + | 156428 | 0.7 | 0.630859 |
Target: 5'- aUGCUGUCCGCggCCGggcuggggggcuCCGGGGGCg- -3' miRNA: 3'- gACGACAGGUGgaGGC------------GGCUCCUGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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