miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 5' -59.4 NC_002512.2 + 155588 0.71 0.572038
Target:  5'- ----cGUCCuguCCUCCGUCGAGGACc- -3'
miRNA:   3'- gacgaCAGGu--GGAGGCGGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 150018 0.66 0.825934
Target:  5'- -gGCUcUCUuCCUCCuCCGAGGACg- -3'
miRNA:   3'- gaCGAcAGGuGGAGGcGGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 147468 0.68 0.728129
Target:  5'- ----cGUCC-CCUCCGCCGcGGGACc- -3'
miRNA:   3'- gacgaCAGGuGGAGGCGGC-UCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 145903 0.66 0.849605
Target:  5'- gCUGCgcgaCCGCCccgcgccgggcaUCCGCCGccGGGACUUc -3'
miRNA:   3'- -GACGaca-GGUGG------------AGGCGGC--UCCUGAA- -5'
8949 5' -59.4 NC_002512.2 + 145440 0.66 0.825934
Target:  5'- gUGCUGgacgagauccUCCGCCUCaacgacaaGaCCGAGGACc- -3'
miRNA:   3'- gACGAC----------AGGUGGAGg-------C-GGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 139188 0.69 0.679952
Target:  5'- --cCUGUCaCGCCgacgCCGUCGAGGACc- -3'
miRNA:   3'- gacGACAG-GUGGa---GGCGGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 133568 0.69 0.650544
Target:  5'- aCUGC-GUCC-CCaucgaCCGCCGGGGACc- -3'
miRNA:   3'- -GACGaCAGGuGGa----GGCGGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 128552 0.67 0.791248
Target:  5'- aUGUcacaUGUCCACCUUCGacggccuCCGGGGGCc- -3'
miRNA:   3'- gACG----ACAGGUGGAGGC-------GGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 124176 0.68 0.718614
Target:  5'- -gGgaGUgCACCuggcugcucgUCCGCCGGGGACa- -3'
miRNA:   3'- gaCgaCAgGUGG----------AGGCGGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 123963 0.73 0.468612
Target:  5'- ----aGUCCGCCUCC-CCGAGGACc- -3'
miRNA:   3'- gacgaCAGGUGGAGGcGGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 119072 0.69 0.699388
Target:  5'- gCUGCUGUCCcucgACCggUCGCgCGAGGAg-- -3'
miRNA:   3'- -GACGACAGG----UGGa-GGCG-GCUCCUgaa -5'
8949 5' -59.4 NC_002512.2 + 110422 0.67 0.791248
Target:  5'- -cGCcuUCCACUUCCGCCcgaucuagaggcgGAGGACg- -3'
miRNA:   3'- gaCGacAGGUGGAGGCGG-------------CUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 106035 0.67 0.812697
Target:  5'- gUGCggcGUCC-UCUCCgccacgcagaucacgGCCGGGGACUUg -3'
miRNA:   3'- gACGa--CAGGuGGAGG---------------CGGCUCCUGAA- -5'
8949 5' -59.4 NC_002512.2 + 101446 0.67 0.783318
Target:  5'- cCUGCUGggCCAUggCCGCCcgcgagGAGGGCUc -3'
miRNA:   3'- -GACGACa-GGUGgaGGCGG------CUCCUGAa -5'
8949 5' -59.4 NC_002512.2 + 101401 0.66 0.841889
Target:  5'- -cGCUGUCCGCCgaCCGCUGucG-CUg -3'
miRNA:   3'- gaCGACAGGUGGa-GGCGGCucCuGAa -5'
8949 5' -59.4 NC_002512.2 + 101045 0.67 0.762601
Target:  5'- -cGCUGUCguuCACCUCCccggcgaacccggcGUCGAGGGCc- -3'
miRNA:   3'- gaCGACAG---GUGGAGG--------------CGGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 95683 0.69 0.66037
Target:  5'- -cGC-GUCCgccggGCCUCCGgCGGGGACg- -3'
miRNA:   3'- gaCGaCAGG-----UGGAGGCgGCUCCUGaa -5'
8949 5' -59.4 NC_002512.2 + 95043 0.66 0.817708
Target:  5'- -gGCUGUgCguguaguagGCCUCCGCCGucGGCa- -3'
miRNA:   3'- gaCGACAgG---------UGGAGGCGGCucCUGaa -5'
8949 5' -59.4 NC_002512.2 + 85596 0.69 0.679952
Target:  5'- -cGC-GUCCgcguucggguGCCUCCGCCGccucuGGGACUUc -3'
miRNA:   3'- gaCGaCAGG----------UGGAGGCGGC-----UCCUGAA- -5'
8949 5' -59.4 NC_002512.2 + 83782 0.72 0.48677
Target:  5'- -gGCg--CCGCCgccgCCGCCGAGGACc- -3'
miRNA:   3'- gaCGacaGGUGGa---GGCGGCUCCUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.