miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8950 5' -49.1 NC_002512.2 + 218718 1.11 0.018335
Target:  5'- cGAAAUAUGAAUCCGGACGACCCGUCGa -3'
miRNA:   3'- -CUUUAUACUUAGGCCUGCUGGGCAGC- -5'
8950 5' -49.1 NC_002512.2 + 70306 0.79 0.762651
Target:  5'- cGGAUGguAAUCCGGACuGACCCGUCa -3'
miRNA:   3'- cUUUAUacUUAGGCCUG-CUGGGCAGc -5'
8950 5' -49.1 NC_002512.2 + 152197 0.74 0.945106
Target:  5'- -----uUGAccgcGUCCGGACGACgUGUCGa -3'
miRNA:   3'- cuuuauACU----UAGGCCUGCUGgGCAGC- -5'
8950 5' -49.1 NC_002512.2 + 191532 0.73 0.967776
Target:  5'- ----cGUGGggUCGGGCGACCCGgCGg -3'
miRNA:   3'- cuuuaUACUuaGGCCUGCUGGGCaGC- -5'
8950 5' -49.1 NC_002512.2 + 133085 0.73 0.967776
Target:  5'- ----gGUGggUCCGGuuggcgcgcaGCGAcucCCCGUCGg -3'
miRNA:   3'- cuuuaUACuuAGGCC----------UGCU---GGGCAGC- -5'
8950 5' -49.1 NC_002512.2 + 120929 0.73 0.967776
Target:  5'- ------cGGAcCCGGGCGACCCGaCGg -3'
miRNA:   3'- cuuuauaCUUaGGCCUGCUGGGCaGC- -5'
8950 5' -49.1 NC_002512.2 + 11030 0.73 0.967776
Target:  5'- ----gGUGcc-CCGGGCGACCuCGUCGg -3'
miRNA:   3'- cuuuaUACuuaGGCCUGCUGG-GCAGC- -5'
8950 5' -49.1 NC_002512.2 + 127644 0.73 0.97078
Target:  5'- aGGGAUcgGGucgCuCGGACGGCCgGUCGa -3'
miRNA:   3'- -CUUUAuaCUua-G-GCCUGCUGGgCAGC- -5'
8950 5' -49.1 NC_002512.2 + 124685 0.72 0.976175
Target:  5'- cGGGAccUcgGGAUCCGGGCGcACgCCGUCc -3'
miRNA:   3'- -CUUU--AuaCUUAGGCCUGC-UG-GGCAGc -5'
8950 5' -49.1 NC_002512.2 + 94933 0.72 0.976175
Target:  5'- -cAGUAUGGcgaacagcGUCCGGGCGGCCuCGcUCGc -3'
miRNA:   3'- cuUUAUACU--------UAGGCCUGCUGG-GC-AGC- -5'
8950 5' -49.1 NC_002512.2 + 181867 0.72 0.980801
Target:  5'- ---cUAUGAAacguUCCGGGgGACCCGaCGa -3'
miRNA:   3'- cuuuAUACUU----AGGCCUgCUGGGCaGC- -5'
8950 5' -49.1 NC_002512.2 + 142103 0.72 0.982846
Target:  5'- ------cGGAcCCGGuacCGACCCGUCGg -3'
miRNA:   3'- cuuuauaCUUaGGCCu--GCUGGGCAGC- -5'
8950 5' -49.1 NC_002512.2 + 220337 0.71 0.988
Target:  5'- ------gGGggCCGGACGGCCuCGUCa -3'
miRNA:   3'- cuuuauaCUuaGGCCUGCUGG-GCAGc -5'
8950 5' -49.1 NC_002512.2 + 81243 0.71 0.988
Target:  5'- cGGAAg--GAGUCCGG-CGGCCUG-CGg -3'
miRNA:   3'- -CUUUauaCUUAGGCCuGCUGGGCaGC- -5'
8950 5' -49.1 NC_002512.2 + 40933 0.71 0.990706
Target:  5'- -uGAUGUGuAUCgacuggCGGACGAUCUGUCGa -3'
miRNA:   3'- cuUUAUACuUAG------GCCUGCUGGGCAGC- -5'
8950 5' -49.1 NC_002512.2 + 103409 0.71 0.990706
Target:  5'- ------gGGAUCCGGGCGACgCGaCGa -3'
miRNA:   3'- cuuuauaCUUAGGCCUGCUGgGCaGC- -5'
8950 5' -49.1 NC_002512.2 + 18930 0.7 0.991866
Target:  5'- ------aGGGcCCGGACGACCuCGUUGg -3'
miRNA:   3'- cuuuauaCUUaGGCCUGCUGG-GCAGC- -5'
8950 5' -49.1 NC_002512.2 + 184746 0.7 0.992908
Target:  5'- cGAcGUGaGGAUCggCGGGCGGCCCGUgGu -3'
miRNA:   3'- -CUuUAUaCUUAG--GCCUGCUGGGCAgC- -5'
8950 5' -49.1 NC_002512.2 + 134863 0.7 0.992908
Target:  5'- ------cGAcGUCuCGGGCGACgCCGUCGg -3'
miRNA:   3'- cuuuauaCU-UAG-GCCUGCUG-GGCAGC- -5'
8950 5' -49.1 NC_002512.2 + 111503 0.7 0.992908
Target:  5'- ------aGAGUCCGGACG-UCCGcCGg -3'
miRNA:   3'- cuuuauaCUUAGGCCUGCuGGGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.