miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8950 5' -49.1 NC_002512.2 + 3226 0.68 0.998817
Target:  5'- ------aGAGUCUGGAccCGGCgCGUCGg -3'
miRNA:   3'- cuuuauaCUUAGGCCU--GCUGgGCAGC- -5'
8950 5' -49.1 NC_002512.2 + 51849 0.7 0.995409
Target:  5'- uGAAAUgcGUGAAgaggcUCCGGaACGuCCUGUCGc -3'
miRNA:   3'- -CUUUA--UACUU-----AGGCC-UGCuGGGCAGC- -5'
8950 5' -49.1 NC_002512.2 + 16551 0.69 0.996062
Target:  5'- -----cUGGcUCCGGAUGuACUCGUCGg -3'
miRNA:   3'- cuuuauACUuAGGCCUGC-UGGGCAGC- -5'
8950 5' -49.1 NC_002512.2 + 35973 0.69 0.99714
Target:  5'- ------gGAGUCCGGgacGCGAUCCGcCGa -3'
miRNA:   3'- cuuuauaCUUAGGCC---UGCUGGGCaGC- -5'
8950 5' -49.1 NC_002512.2 + 99392 0.69 0.99714
Target:  5'- --cGUcgGggUCCGGACu-CCCGgggCGg -3'
miRNA:   3'- cuuUAuaCuuAGGCCUGcuGGGCa--GC- -5'
8950 5' -49.1 NC_002512.2 + 112796 0.69 0.99714
Target:  5'- ------cGggUCCaGGGCGGCCCG-Ca -3'
miRNA:   3'- cuuuauaCuuAGG-CCUGCUGGGCaGc -5'
8950 5' -49.1 NC_002512.2 + 136072 0.69 0.997852
Target:  5'- ----cGUGggUCCGGccggggggccggcuGCGgacGCCCGUCa -3'
miRNA:   3'- cuuuaUACuuAGGCC--------------UGC---UGGGCAGc -5'
8950 5' -49.1 NC_002512.2 + 101750 0.69 0.997961
Target:  5'- cGAGGUgGUGGc-CCGGGCGcUCCGUCGg -3'
miRNA:   3'- -CUUUA-UACUuaGGCCUGCuGGGCAGC- -5'
8950 5' -49.1 NC_002512.2 + 32499 0.68 0.998291
Target:  5'- uGGAGUcgGggUCCaGGGCGAucuCCCGg-- -3'
miRNA:   3'- -CUUUAuaCuuAGG-CCUGCU---GGGCagc -5'
8950 5' -49.1 NC_002512.2 + 175320 0.7 0.995409
Target:  5'- aGGGUGcGGAUCCGGGCuGACCCcgcucGUCa -3'
miRNA:   3'- cUUUAUaCUUAGGCCUG-CUGGG-----CAGc -5'
8950 5' -49.1 NC_002512.2 + 55243 0.7 0.995409
Target:  5'- -----cUGGAgaacgugCCGGACGACCCGg-- -3'
miRNA:   3'- cuuuauACUUa------GGCCUGCUGGGCagc -5'
8950 5' -49.1 NC_002512.2 + 99877 0.7 0.99384
Target:  5'- cGAcGUGcUGGA-CCGGgaggaggcGCGGCCCGUCGa -3'
miRNA:   3'- -CUuUAU-ACUUaGGCC--------UGCUGGGCAGC- -5'
8950 5' -49.1 NC_002512.2 + 11030 0.73 0.967776
Target:  5'- ----gGUGcc-CCGGGCGACCuCGUCGg -3'
miRNA:   3'- cuuuaUACuuaGGCCUGCUGG-GCAGC- -5'
8950 5' -49.1 NC_002512.2 + 94933 0.72 0.976175
Target:  5'- -cAGUAUGGcgaacagcGUCCGGGCGGCCuCGcUCGc -3'
miRNA:   3'- cuUUAUACU--------UAGGCCUGCUGG-GC-AGC- -5'
8950 5' -49.1 NC_002512.2 + 181867 0.72 0.980801
Target:  5'- ---cUAUGAAacguUCCGGGgGACCCGaCGa -3'
miRNA:   3'- cuuuAUACUU----AGGCCUgCUGGGCaGC- -5'
8950 5' -49.1 NC_002512.2 + 142103 0.72 0.982846
Target:  5'- ------cGGAcCCGGuacCGACCCGUCGg -3'
miRNA:   3'- cuuuauaCUUaGGCCu--GCUGGGCAGC- -5'
8950 5' -49.1 NC_002512.2 + 81243 0.71 0.988
Target:  5'- cGGAAg--GAGUCCGG-CGGCCUG-CGg -3'
miRNA:   3'- -CUUUauaCUUAGGCCuGCUGGGCaGC- -5'
8950 5' -49.1 NC_002512.2 + 103409 0.71 0.990706
Target:  5'- ------gGGAUCCGGGCGACgCGaCGa -3'
miRNA:   3'- cuuuauaCUUAGGCCUGCUGgGCaGC- -5'
8950 5' -49.1 NC_002512.2 + 18930 0.7 0.991866
Target:  5'- ------aGGGcCCGGACGACCuCGUUGg -3'
miRNA:   3'- cuuuauaCUUaGGCCUGCUGG-GCAGC- -5'
8950 5' -49.1 NC_002512.2 + 134863 0.7 0.992908
Target:  5'- ------cGAcGUCuCGGGCGACgCCGUCGg -3'
miRNA:   3'- cuuuauaCU-UAG-GCCUGCUG-GGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.